Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01070 ATGGGGAAAGGAAGAAGTCCTGGGAAATGGTTCAAGAACTTACTTTTGGGGAAGAAATCGTCTTCAAAGTCCACTTCATCAAAGAAGAATGACATTTTTAAACCTTCAAGTGACAGGGATGCACTGGTGTCTTCTGAGGTACCCGTCTTTGATCCAACTGTGGATTCGTTGCTGATATCCGCACCACTATCCGGAGCTAATGATTCTAAAGGAGTGATTTCCGAAAAGGAGGTAGTTAGCAGGTCATCACATGATAGGGATGTTCTTTCAACTGGAGTTGAAGAAGCTAAGGTGCAAGATGTTGCTAATTTTGGATCTCAAGAGGATCTTGAGAAACTCCAGCTTACAGAAGCCGCTATAAAAGTTCAGGCTGCTTGTAGAAGCTATATGGCCCGTCAAACATTTCAAAAACTCAAAGGTGTCATACAACTGCAAGCTTTTATTCGTGGCCACTTGGTTAGAAGACAAGCCGTTTCTGCATTATATTGTGTGAAGGGAATAGTTAAATTGCAAGCATTGGCTCGTGGTTACAATGTTAGACGATCTGATATTGGGCTTGCAGTCCAGAAAATTCGTAAGGATACTCATTGCTCAAATTCTGTTCGGGTAGTTTCATCCTCACAGGCAGAGAAGCTGTCTGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGTTCCTCTATCACTCAACAGTGATCCTGGAGAACCTAACATGGCTCGGAAGTGGCTTGACTATTGGACACGGTCACACTTTTGGGCACCTCTTCCTGAATTTAAAAAGAAACATGACTCAGTGTCTGATGAGAAAAATGGCAGTTCTCAGACAGTTCAAAAGGGACAAGTTAAAAAAAGTACTCAGAAATCTCCTGCTGTGAAAGCTGACAATGGCTCAAATTTAGGTTCCAACAAGTCTAAACAGCGTCCGAAAAAGGATTCAAGCCACCCATTGCCTTTAGCTCAGGAACACCCACAGAAAGAAACCGAGAAAAGTAGTTCTGAAAAAACTCATGCGCATAATGTTTCAAATGGATCTGAGGTTGTTAATGAAAAAAGAAAACCCAGCAATAAAAAGATTTTGGATCATGCTGTCACTGATGTTTCAGAACAGGGCCCAAATGCCTCTTCAGAGAAAAAGAAAGATTCGACCGTGCCAAAATCAAAAGAGTCTGATCCTGAGAAAGGTCATAGACAGCAAGCAAAAGACAAGAGTGATAATGAGGCACATACTGATCCCATTGCTGCCTTAAAGACTAGTGTGAAGAAAGGTGAAAATGAAAAAATTCAAGGAGTCAGTGAGGATTTGAATGGTGGTGACAATTGTATCAGTAACAATAGCCAAAGAAGAGCTTCACTACCTGCTAACTTTAATAATGATCAAGAGAATGAGTTATATAACACTCCTGTTACTCCAAGACTGCCCAGTTATATGGCTCCTACTGAATCTGCAAAAGCTAGGCTAAGAGGACAAGGCTCTCCAAGATTTGCTACTGATTTGGTGGAAAAAAACAGTACAACCAGGCGGCATTCACTTTCATCCTCACTTAATGGCAGGTCAGGTTCATTTTCCCCGAGAGCTGAAAGGCTGATAGGTGTGAGCGGCAAAGGAGGGATAAGGTCTGATAGATCTCTGTCATCTTCAAGGGATGGGACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1695 0.4206 MGKGRSPGKWFKNLLLGKKSSSKSTSSKKNDIFKPSSDRDALVSSEVPVFDPTVDSLLISAPLSGANDSKGVISEKEVVSRSSHDRDVLSTGVEEAKVQDVANFGSQEDLEKLQLTEAAIKVQAACRSYMARQTFQKLKGVIQLQAFIRGHLVRRQAVSALYCVKGIVKLQALARGYNVRRSDIGLAVQKIRKDTHCSNSVRVVSSSQAEKLSENVFVCKLLASSPYAVPLSLNSDPGEPNMARKWLDYWTRSHFWAPLPEFKKKHDSVSDEKNGSSQTVQKGQVKKSTQKSPAVKADNGSNLGSNKSKQRPKKDSSHPLPLAQEHPQKETEKSSSEKTHAHNVSNGSEVVNEKRKPSNKKILDHAVTDVSEQGPNASSEKKKDSTVPKSKESDPEKGHRQQAKDKSDNEAHTDPIAALKTSVKKGENEKIQGVSEDLNGGDNCISNNSQRRASLPANFNNDQENELYNTPVTPRLPSYMAPTESAKARLRGQGSPRFATDLVEKNSTTRRHSLSSSLNGRSGSFSPRAERLIGVSGKGGIRSDRSLSSSRDGTEKLIQPQWRR 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01070 564 MobiDBLite consensus disorder prediction 17 31 - -
Pumo8g01070 564 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Pumo8g01070 564 Pfam Protein of unknown function (DUF4005) 462 543 IPR025064 -
Pumo8g01070 564 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Pumo8g01070 564 Pfam IQ calmodulin-binding motif 139 156 IPR000048 GO:0005515
Pumo8g01070 564 Pfam IQ calmodulin-binding motif 165 181 IPR000048 GO:0005515
Pumo8g01070 564 Gene3D - 112 163 - -
Pumo8g01070 564 MobiDBLite consensus disorder prediction 439 472 - -
Pumo8g01070 564 MobiDBLite consensus disorder prediction 308 339 - -
Pumo8g01070 564 ProSiteProfiles IQ motif profile. 137 166 IPR000048 GO:0005515
Pumo8g01070 564 MobiDBLite consensus disorder prediction 509 524 - -
Pumo8g01070 564 MobiDBLite consensus disorder prediction 542 556 - -
Pumo8g01070 564 MobiDBLite consensus disorder prediction 273 307 - -
Pumo8g01070 564 MobiDBLite consensus disorder prediction 353 367 - -
Pumo8g01070 564 MobiDBLite consensus disorder prediction 266 564 - -
Pumo8g01070 564 ProSiteProfiles IQ motif profile. 165 190 IPR000048 GO:0005515
Pumo8g01070 564 SMART iq_5 114 136 IPR000048 GO:0005515
Pumo8g01070 564 SMART iq_5 137 158 IPR000048 GO:0005515
Pumo8g01070 564 SMART iq_5 162 184 IPR000048 GO:0005515
Pumo8g01070 564 MobiDBLite consensus disorder prediction 17 41 - -
Pumo8g01070 564 MobiDBLite consensus disorder prediction 376 413 - -
Pumo8g01070 564 PANTHER IQ-DOMAIN 5-RELATED 1 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01070 Pumo-Chr8 40659355 40664757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01070 4 564 IQD Protein Family AT1G14380 34.272 1.72e-78 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01070 - - gmx:100800548 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01070 8 40659355 40664757 Pumo8g01070 8 40659355 40664757 ECH
Pumo8g01070 8 40659355 40664757 Pumo4g01309 4 16682902 16690190 ECH