Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01068 ATGGGTAACTGCCTAGATTCTTCTGCCAAAGTTGATGCAGCTCAGAGCTCTAGATCCACTTCTGCATCAGGAATCTCAAAAAGTACTCCTTCCAGTTTATCTATTCCATCATACAGTGAAAAAAGCAATGCCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATTTTGTCTTCTCCCAATCTAAAGCCCTTCACATTCAATGAGCTGAAGAATGCCACCAGAAATTTTCGCCCCGATAGTCTTCTTGGTGAAGGGGGATTTGGATATGTCTACAAGGGGTGGATTGATGAACACACATTTACAGCTTCAAGACCCGGATCAGGAATGGTTGTTGCTGTTAAGAGGCTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAGGTAAACTACCTTGGACAACTGTACCATCCAAATCTGGTTAAATTAATTGGGTACTGCTTGGAGGGAGAGAATCGGCTATTGGTGTATGAGTTTATGCCAAAAGGGAGCTTAGAGAACCATTTATTTAGAAGAGGACCACAACCACTGTCTTGGTCAGTGAGGATGAAAGTGGCTATTGGTGCTGCCAGAGGACTCTCCTTCCTTCATAATGCCAAATCACAAGTCATATACCGAGATTTTAAAGCTTCTAACATCCTACTAGATGCTGAGTTTAATGCTAAACTCTCTGACTTTGGTTTAGCTAAGGCGGGTCCTACTGGTGATAGAACTCATGTGTCTACTCAAGTCATGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGGTTGACGGCCAAAAGTGATGTCTACAGCTTTGGAGTTGTGTTGCTTGAACTTCTATCCGGAAGACGTGCAGTTGATAAAACAATAGCCGGCATGGAGCAGAATCTGGTGGACTGGGCGAAACCATATTTGAGCGATAAGCGAAGACTGTTCCGGATTATGGATACCAAGTTGGAGGGCCAGTACCCGCAAAAGGGGGCCTTCATGGCTGCCACACTTGCTCTACAATGCCTCAACAGTGAGGCCAAGTCAAGGCCTCCAATGACAGAGGTTTTAGAAACTCTGGAACAGATAGAGGCCCCCAAAACTGCGGGCAGAAACTCCCATTCAGAACATCATAGAGTCCACACTCCTGTGAGAAAGTCTCCTGCGCGAAACCGGTCACCGTTGAATCTAACTCCTACTGCATCCCCTCTACCGGCTCACCTAACTCCTATTGCATCCCCTCTACCGGCTCACCGGCAATCGCCTCGTGTGCACTAA 1269 0.4641 MGNCLDSSAKVDAAQSSRSTSASGISKSTPSSLSIPSYSEKSNASSLPTPRSEGEILSSPNLKPFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASRPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLYHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTIAGMEQNLVDWAKPYLSDKRRLFRIMDTKLEGQYPQKGAFMAATLALQCLNSEAKSRPPMTEVLETLEQIEAPKTAGRNSHSEHHRVHTPVRKSPARNRSPLNLTPTASPLPAHLTPIASPLPAHRQSPRVH 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01068 422 MobiDBLite consensus disorder prediction 362 422 - -
Pumo8g01068 422 ProSitePatterns Protein kinases ATP-binding region signature. 83 115 IPR017441 GO:0005524
Pumo8g01068 422 PANTHER OS01G0588500 PROTEIN-RELATED 36 361 - -
Pumo8g01068 422 Gene3D Transferase(Phosphotransferase) domain 1 163 383 - -
Pumo8g01068 422 MobiDBLite consensus disorder prediction 9 60 - -
Pumo8g01068 422 CDD STKc_IRAK 83 360 - -
Pumo8g01068 422 MobiDBLite consensus disorder prediction 386 400 - -
Pumo8g01068 422 Gene3D Phosphorylase Kinase; domain 1 53 162 - -
Pumo8g01068 422 ProSiteProfiles Protein kinase domain profile. 77 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01068 422 FunFam Probable serine/threonine-protein kinase PBL8 163 376 - -
Pumo8g01068 422 FunFam Serine/threonine-protein kinase BIK1 44 162 - -
Pumo8g01068 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Pumo8g01068 422 SUPERFAMILY Protein kinase-like (PK-like) 48 357 IPR011009 -
Pumo8g01068 422 Pfam Protein tyrosine and serine/threonine kinase 81 357 IPR001245 GO:0004672|GO:0006468
Pumo8g01068 422 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01068 Pumo-Chr8 39790671 39794444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01068 53 357 Glycoside Hydrolase AT3G07070 53.247 5.92e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo8g01068 PK_Tyr_Ser-Thr 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01068 - - gmx:100809778 784.252