Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01066 ATGCAAGATATGAAGAAGCAGGACAAGCAGAAGCAGCTGGTCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATACTCAGGGAGCAGATTGGTGTACATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACAACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGATTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACATTCTTTTATGTGAGGCTCAAAAAATATTTGGTAACAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTGTGCAAAAAGAGAGCAAAATATGAAGCATTAGCAAAAGAGAACAACACTTCATACATCAATTCAAATAACAAAAGGATTTTTCTCCAGCACGGGTGTGATACAGATGTAGCTTCAGAATCTGCAGTTAAGAAGATGAGGAGGTCCCATATCCCTGATGCTGCAGAGAAGATCAACTTTGGAGACAGATCACATAAACAAAATGGGATTCCATTAAATCAGCAGTCAAGAGCACCATTTGCAGTCTTAGCTCAAAACTCTCACAATGCCAACTTGCCAGACCAGCATCATGTCTGTAATTTGAAGTTTAGTGATTATGCCCAAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGACCCAAAGATAAACGCATTGATGCAACAAGCAGAGTTGTTAAGTTCACTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAATCGAACCAAAGAATCAGACATTCCCAGATATAAGATTCCAGATTTACAGCTTGTAGATCTCAAAGATTTGTTGGAGGACTTAAAGAGCAGTAGTGAGGAAATCCAGCCATGCTGGAGGCAAATTGAACTATATGAAGACTCTCCTGGCAGTTCTGAATACAGTACAGGATCAACTCTCCTGCCTCATTCAGCTGGTGAGAATTTGGAACACTCACTGCATCAGGATATTGGAATTGAACTGAATATACAAATTGGAGGTCCAGAAGAAGTTAGGGGATGTGACCAAGGGGTTCTTTCTAGTGCAACTCTGGATCAAGATTTATTCCGATCTTGTGAGGAACAGATAAACAATGATGCAATTGTTTCTGCCTTGTCAAGTTCGGAGGAGTTCAGTTCACCTCTTCAAGTTACTCCTCTGTTTAGATCCTTAGCTGCTGGAATTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTCGGAATGGAGTCTCCGTCGCTCAATCCAAGTGCCAACCCCTCACAACCGCCACTCTGCAAAAGAGCCCTCCTAATCTGA 1416 0.411 MQDMKKQDKQKQLVNEESKKKERHIVTWTQEEDDILREQIGVHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDILLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNTSYINSNNKRIFLQHGCDTDVASESAVKKMRRSHIPDAAEKINFGDRSHKQNGIPLNQQSRAPFAVLAQNSHNANLPDQHHVCNLKFSDYAQNNKIQGTFLKKDDPKINALMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLNRTKESDIPRYKIPDLQLVDLKDLLEDLKSSSEEIQPCWRQIELYEDSPGSSEYSTGSTLLPHSAGENLEHSLHQDIGIELNIQIGGPEEVRGCDQGVLSSATLDQDLFRSCEEQINNDAIVSALSSSEEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNPSANPSQPPLCKRALLI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01066 471 SUPERFAMILY Homeodomain-like 24 118 IPR009057 -
Pumo8g01066 471 Gene3D - 14 76 - -
Pumo8g01066 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 71 IPR017930 -
Pumo8g01066 471 Gene3D - 79 148 - -
Pumo8g01066 471 Pfam Myb-like DNA-binding domain 28 88 - -
Pumo8g01066 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Pumo8g01066 471 CDD SANT 80 121 IPR001005 -
Pumo8g01066 471 SMART sant 76 124 IPR001005 -
Pumo8g01066 471 SMART sant 24 73 IPR001005 -
Pumo8g01066 471 FunFam Transcription factor MYB124 20 76 - -
Pumo8g01066 471 ProSiteProfiles Myb-like domain profile. 28 71 IPR001005 -
Pumo8g01066 471 PANTHER MYB PROTEIN-RELATED 27 187 - -
Pumo8g01066 471 CDD SANT 27 71 IPR001005 -
Pumo8g01066 471 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01066 Pumo-Chr8 39763219 39769318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01066 13 321 MYB Transcription Factor Family AT2G02820 64.241 1.64e-140 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo8g01066 Myb_DNA-bind_6 7.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01066 K09422 - gmx:100807667 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01066 8 39763219 39769318 Pumo8g01066 8 39763219 39769318 ECH