Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01064 ATGTGGCATAAAACCTGCAATGAGATGGCTTTCTTCCCGGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCATCAACCTCCACCTTCACTCACCTCACTTCTACCAACGTGTACACCTCAAGAGTATCATGGGGGAGTGACCTTTCTAGGAAAGAGATCCATGTCATTTTCATCAGGAATTGAGCATGGAGAAGAGGCCAATGCTGAGGAAGATTTGTCTGATGATGGAACACATGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAATAAGCTTGAGCCAGAGAGGAAAGTGCAGCTTGCAAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTCCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCTGAGGTTAGTAGTTTCCTTCTAACTCAATCAAATTCCAATCATTTAGTGCTGTAG 567 0.448 MWHKTCNEMAFFPANFMLQTPHHDDHQPPPSLTSLLPTCTPQEYHGGVTFLGKRSMSFSSGIEHGEEANAEEDLSDDGTHAGEKKRRLNMEQVKTLEKSFELGNKLEPERKVQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAEVSSFLLTQSNSNHLVL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01064 188 CDD homeodomain 84 140 IPR001356 GO:0003677
Pumo8g01064 188 MobiDBLite consensus disorder prediction 62 89 - -
Pumo8g01064 188 FunFam Homeobox-leucine zipper protein ATHB-13 76 143 - -
Pumo8g01064 188 Pfam Homeobox associated leucine zipper 139 175 IPR003106 GO:0006355|GO:0043565
Pumo8g01064 188 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Pumo8g01064 188 Gene3D - 76 146 - -
Pumo8g01064 188 SUPERFAMILY Homeodomain-like 75 141 IPR009057 -
Pumo8g01064 188 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Pumo8g01064 188 MobiDBLite consensus disorder prediction 74 89 - -
Pumo8g01064 188 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 61 175 IPR045224 GO:0003700
Pumo8g01064 188 SMART HOX_1 82 143 IPR001356 GO:0003677
Pumo8g01064 188 Coils Coil 131 179 - -
Pumo8g01064 188 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Pumo8g01064 188 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Pumo8g01064 188 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01064 Pumo-Chr8 39725329 39727907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01064 5 173 Homeobox Transcription Factor Family AT1G69780 69.942 4.34e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo8g01064 Homeodomain 8.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01064 K09338 - gmx:100808033 318.161