Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01056 ATGGAATTGGAAGCTGATCATCAAAATGGGATCCGAAGCAGACCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACGTTAATGACGTCACGGAACAACCTTGTTCCACCACCACACGGGACAGCGTAGTAACTGCTACTACTATTACTACTACTACTTCATCTGGTACCAACAACAACAGTCTCCACTTGGCGGAGCAGCCAAAGAAGGCTCCGCCAAAGCGGAGTTCCACGAAGGACCGCCACACCAAAGTCGATGGGCGAGGCCGCCGGATCCGTATGCCGGCGGCCTGCGCAGCAAGAGTGTTCCAGCTCACGCGTGAGCTGGGACACAAGTCCGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCAGCGGTCATCGCCGCCACCGGCACCGGCACTATCCCCGCCAACTTCACTTCCCTCAACATCTCCCTCCGCAGCTCCGGCTCCACCATGTCGGCGCCGTCGCACTATTTCCGAGGAAACTACTTCAACCCTAGCACGTTCTCCACGTCCACCGCCGCCGCCGCCGCTGCCGCTGCGGCGGCTCAGCTAAGAAACCGCGCGGAGTGGGACCGGAACATGAGCATGGTGATGGAGGATTCTAGGAGGAGCATGTTGGAGAACACTTCTTCCATCTCCGCAATTTTGAATTTCAACCCTATTGGGAACGTTAATGTAATTCAACAAGCGAAGCAAGAGCTTCGAGAAGAATCCGGCGGCGGCGGAGGAGGCGGTGGCGTCGGTCTTGAATCGGTGGCTTCGGATTCCGATGGAAGCTTGGGGAGAAAGAGAAGACCGGAGCAAGAACTATCACAAATGGGAAGCTATTTGATACAATCAAGCACAGGATCACTTCCGGCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCGGGCCACGGCAACCAAGCCATGAGCGGTGGCGGCGGCGGCGGTGGCAATGGTGGCGAAAATCCCATTTGGGCAATTCCCTCAGTTGGAAACAGTGGTGTGTATAGAGGAGCTATGTCTGCCCCAGGTGGCATTCATTTCATGAATTTTGCTTCTCCGATGCCCCTTATGCCCGGAGGTCAACTAGGTTCCGCCATGGTTGGTGGCGGTGGCGGTGGCGGTGGCGGTAGCGGCGGTGCTCAACTTCTAAGTGAAAGTAACTTAGGCATGCTTGCGGCCCTTAATGCCTACAGACAGATTCCGGCGAACGGCGTCTCAGAGTCTCCGGCCAGCGCCGGGCAACCTCACGGCGGAGACGATGGACGTGACTCAACCAGTCAACATTCCTGA 1302 0.5714 MELEADHQNGIRSRPNFPLQLLEKKDVNDVTEQPCSTTTRDSVVTATTITTTTSSGTNNNSLHLAEQPKKAPPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSTAAAAAAAAAAQLRNRAEWDRNMSMVMEDSRRSMLENTSSISAILNFNPIGNVNVIQQAKQELREESGGGGGGGGVGLESVASDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPASHASNTAAFWMVAGHGNQAMSGGGGGGGNGGENPIWAIPSVGNSGVYRGAMSAPGGIHFMNFASPMPLMPGGQLGSAMVGGGGGGGGGSGGAQLLSESNLGMLAALNAYRQIPANGVSESPASAGQPHGGDDGRDSTSQHS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01056 433 MobiDBLite consensus disorder prediction 407 433 - -
Pumo8g01056 433 MobiDBLite consensus disorder prediction 68 86 - -
Pumo8g01056 433 MobiDBLite consensus disorder prediction 50 65 - -
Pumo8g01056 433 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 395 IPR005333 GO:0003700
Pumo8g01056 433 MobiDBLite consensus disorder prediction 238 276 - -
Pumo8g01056 433 ProSiteProfiles TCP domain profile. 78 132 IPR017887 -
Pumo8g01056 433 MobiDBLite consensus disorder prediction 50 86 - -
Pumo8g01056 433 Pfam TCP family transcription factor 77 201 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01056 Pumo-Chr8 39498967 39500975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01056 276 408 TCP Transcription Factor Family AT1G69690 36.364 3.41e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo8g01056 TCP 1.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01056 - - vum:124821453 681.019