Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01044 ATGATGGAAGAGAGAAATAATGATGGTGAGAAACTTGATGAAGTTATGCTACCAGGGTTCAGGTTTCATCCAACTGATGAGGAACTTGTAGGGTTTTACCTCAAGAGAAAGATTCAGCAACGCCCTTTGACTATTGAGCTCATCAAGCAGCTTGATATCTACAAATATGACCCTTGGGATCTTCCTAAGTTGGCCACCACAGGAGAGAAAGAGTGGTATTTCTACTGTCCCAGGGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACTGGGACTGATAGGCCTATCTACTCCTCAGAAGGTTCCAAGTGTATTGGCCTGAAGAAATCTCTAGTGTTTTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCAATGACTCACTATCCCCAAAGTACATAGACAAGACCATTCCTGCTAATGAATCTTGGGCTATCTGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTTTGTCTCACTCTTGGGTCTCTTCCCTACCTGAAACAAGAACCTCTGATCACATGCTCCTAACCAAAGATCAAGACAGCACCCACTTTTGTTCAGACAACATGCCAATGACAAAGAAAACTAGCTTAGCCAGCCAGTTCTGTACTAACAATTACAATGATGCACAACAATCCTTAACCACTAATAGTAGTAGTACTCTTTGTCCCTTAGATGTTGCCTCATACAAGTCCATTATTAACCCATTGCTTTACAAAGCCTTTGATCATTTTCCCATTTCAAATGGAGACCTCAGCACTAGCTTGCTATTCTCACCCCCCTTTGAAACATCAGATACTAATTCCAAATCTACAGTGGACGTTTCTTCAATGTTGTTGAACATGTCATCCTCAGTGCTTGGAGACTTTAACAAGACTTCAGAGGATACAAACACAAATTCAACTACAAACTTTGGTGGGTTGCAATTAGAGGACAGTGGTGGCTACCCAATACCATATTTTCTACGTGAGATGCAAACCACATTTGGTAACCAACAACAACAATATGATAATAATATTAATGCATTGGTAAAGGGTCCTAATGTGAATGTGAATGTGCCTCGTGTTGATGACCAAGAGTTGGAGTTGGAGTTGGAGTTGGAGACAGTACAACGATCCATTGGGTTTCCATTAACCACTATGCCTTTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCATTTCCTTGTGATGTGCCATCTAGTTATTATTCCACAACTAAGTGCTATACTTAG 1326 0.4133 MMEERNNDGEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLNDSLSPKYIDKTIPANESWAICRIFKKTNATAQRALSHSWVSSLPETRTSDHMLLTKDQDSTHFCSDNMPMTKKTSLASQFCTNNYNDAQQSLTTNSSSTLCPLDVASYKSIINPLLYKAFDHFPISNGDLSTSLLFSPPFETSDTNSKSTVDVSSMLLNMSSSVLGDFNKTSEDTNTNSTTNFGGLQLEDSGGYPIPYFLREMQTTFGNQQQQYDNNINALVKGPNVNVNVPRVDDQELELELELETVQRSIGFPLTTMPFNIGDAWKSNLLWDTSSFPCDVPSSYYSTTKCYT 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01044 441 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 244 - -
Pumo8g01044 441 Gene3D NAC domain 25 178 IPR036093 GO:0003677|GO:0006355
Pumo8g01044 441 FunFam NAC domain-containing protein 35 25 176 - -
Pumo8g01044 441 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Pumo8g01044 441 ProSiteProfiles NAC domain profile. 16 173 IPR003441 GO:0003677|GO:0006355
Pumo8g01044 441 SUPERFAMILY NAC domain 15 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01044 Pumo-Chr8 39275264 39277005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01044 2 315 NAC Transcription Factor Family AT1G26870 59.202 3.09e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo8g01044 NAM 8.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01044 - - gmx:100783995 716.072