Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01042 ATGGCAAATCCAACATCCTCGTCCTCCTCCTCATCCTTTGCCTATGAATGGACTCATGATGTTTTCCTCAGTTTTCGGGGTGAGGATACCCGCACCGGTTTCACTGGAAACCTTTATCATGCTCTCTGTGAAAAGGGAATCAGCACCTTCATGGATGATCAAGGGCTGAGCAAGGGAGAACAAATCACACCAGCTCTAATGAAGGCAATTCAAGAATCCAGGATTGCCATTGTGATTTTTTCACAAAACTATGCATCATCAACTTTTTGTTTACAAGAACTTGTGAAGATCATGGAGTGCTTCAAACACAAGGGCAGGTTGGTCTTGCCTGTTTTTTATAAAGTGGATCCATCTGATGTGCGCCATCAGAAAGGAAGCTATGCAGAAGCACTGGCCAAACATGAAACCATCAGTGACAAGGACAAGGTGGAAAAATGGAGGTTAGCTTTGAAAGAAGCTGCAACTCTATCTGGTTGGCATTCCAATCAAAGGTACGAATATGATATCATTCGAGAGATCATTCAAGAGGTCTCTAAAAGGATCAATCGTGTCCCTTTATACGTTGCTAATTACCCAGTTGGCTTAGAGTCTCGCGTGCACAAGGTAAAGTCACTTGTTGATGTTGAGTCAAATGATGGAGTCCACATAGTAGGGATTTATGGAATGGGTGGAATCGGAAAGACAACACTTGCATGTGCAGTGTACAATTTCATCGCTGATCAGTTTGAAGGTCTCTCTTTTCTTTTTGATGTTAGAGAAAATTCCGAGAAGCATGGTCTGGAACACCTTCAGGAGACACTTCTTTCTGATATACTCGGGCAGAAAGACATTAAGTTGGGGAATGTAAAGAGAGGAATTCCAATAATTAAAAGTAGGCTCTGTAAAAAGAAAATTCTTTTGATTTTGGATGATGTTGACAAATTGGAGCAATTGAAAGTACTTGCAGGTGGACGTGATTGGTTTGGTTCTGGCAGCAGAATTATTATAACAACAAGAGATATACATCTGCTGCATGTTCATGGTGTTGAAAGAACCTATGAAGTAGAAGGATTAAATCATGAAGAAGCCCTTGAATTGTTCAGCTGGAATGCTTCAGGAAGAAAACAAGTTAATTCTAGTTATCTGGACATTTCAAAGAGAGTAGTATGCTATTCTAATGGCCTTCCATTGTCACTGGAAATAATAGGTTCTGATTTATTTGGTAAATCAGAGTTGGAATGGATGTCAGCATTAGATGTTTATGAAAGAACTCCTCATGAAAATATTCAGGAAATCCTAAGAGTAAGCTATAATGGCTTAAAGGAACTTGAGAAGCAAATTTTTTTAGACTTGGCCTGCTTCTTTATAGGATACAAACTAAGAGATGTCATAGACATACTACGTGGTGGTTATGGCATCGCCCCAGATTATGCTATCGAGGTGTTGATTGATAAGTGTCTAATAAAAATTGTTCAACATTATGTGAGAATGCATAATCTGATTGAGGATATGGGTAGAGAAATTGTGCGCCAGGAATCACCCTCAAAGCCCGGTGAACGCAGTAGATTATGGTTCTCTAAAGATATTCTTCGTGTTTTCAAAGAGAACAAGGGATCCGATAAAACTGAGATCATCATGCTACACCTGCCTAAAGAAAAAGATGTCCAATGGAATGGAAATGCATTGAAGAAGATGGAAAACCTTAAATACTAG 1692 0.3948 MANPTSSSSSSSFAYEWTHDVFLSFRGEDTRTGFTGNLYHALCEKGISTFMDDQGLSKGEQITPALMKAIQESRIAIVIFSQNYASSTFCLQELVKIMECFKHKGRLVLPVFYKVDPSDVRHQKGSYAEALAKHETISDKDKVEKWRLALKEAATLSGWHSNQRYEYDIIREIIQEVSKRINRVPLYVANYPVGLESRVHKVKSLVDVESNDGVHIVGIYGMGGIGKTTLACAVYNFIADQFEGLSFLFDVRENSEKHGLEHLQETLLSDILGQKDIKLGNVKRGIPIIKSRLCKKKILLILDDVDKLEQLKVLAGGRDWFGSGSRIIITTRDIHLLHVHGVERTYEVEGLNHEEALELFSWNASGRKQVNSSYLDISKRVVCYSNGLPLSLEIIGSDLFGKSELEWMSALDVYERTPHENIQEILRVSYNGLKELEKQIFLDLACFFIGYKLRDVIDILRGGYGIAPDYAIEVLIDKCLIKIVQHYVRMHNLIEDMGREIVRQESPSKPGERSRLWFSKDILRVFKENKGSDKTEIIMLHLPKEKDVQWNGNALKKMENLKY 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01042 563 Gene3D - 15 181 IPR035897 -
Pumo8g01042 563 SUPERFAMILY "Winged helix" DNA-binding domain 421 526 IPR036390 -
Pumo8g01042 563 ProSiteProfiles TIR domain profile. 17 181 IPR000157 GO:0007165
Pumo8g01042 563 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 562 IPR044974 GO:0006952
Pumo8g01042 563 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 183 - -
Pumo8g01042 563 Gene3D - 350 434 IPR042197 -
Pumo8g01042 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 444 IPR027417 -
Pumo8g01042 563 Gene3D - 182 346 IPR027417 -
Pumo8g01042 563 PRINTS Disease resistance protein signature 216 231 - -
Pumo8g01042 563 PRINTS Disease resistance protein signature 292 306 - -
Pumo8g01042 563 PRINTS Disease resistance protein signature 385 399 - -
Pumo8g01042 563 Pfam NB-ARC domain 198 434 IPR002182 GO:0043531
Pumo8g01042 563 Pfam TIR domain 19 181 IPR000157 GO:0007165
Pumo8g01042 563 SMART till_3 18 156 IPR000157 GO:0007165
Pumo8g01042 563 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01042 Pumo-Chr8 39164033 39168686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01042 13 562 WRKY Transcription Factor Family AT4G12020 30.700 1.13e-63 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01042 - - gmx:100814790 881.322