Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01039 ATGGCTAAGCCAACATCGTTGTCCTCCTCTTCCTGTGAATGGATGTATGATGTTTTCCTCAGTTTTCGGGGTGAGGATACTCGCACCGGTTTTACTGGAAACCTTTATCATGCTTTGCGTGAAAAGGGTGTCAACACTTTCATTGACGATCAAGAGCTGAGGAAGGGAGAAGAAATCACACCAGCTCTAATGAGGGCAATTCAAGAATCTAGGATTGCCATTGTGATTTTTTCACAAAACTATGCATCATCAACTTTTTGTTTAGAAGAACTTGTGAAGATCATGGAGTGTTTCAAAAACAAAGGAAGGTTGGTTTGGCCTGTTTTTTATCAAGTGGATCCATCTGATGTGCGCAATCAGAAAGGAAATTATGCAGAAGCACTCGCCAAGCATAAGAGAAGAATCCGAGACAAGGACAAGGTGAAAAAATGGAGGTTAGCTTTGCATGAAGCTGCAAGTCTATCTGGTTGGCATTTCAAACAAGGGTATGAATATGAATTCATCCAAGAGATTATTCAAGAGGTCTCTAAAAGAATCAAACGTATCCCTTTATATGTTGCTAATTACCCAGTTGGCTTAGAGTGTCGTGTGCAGAAGGTGAAGTCACTTCTTGATGTTGAGTCAAATGATGGAGTCCACATGGTAGGGATTTATGGAATAGGTGGAATTGGAAAAACAACACTTGCATGTGCAGTGTACAATTTCATTGCCGATCAATTTGAAGGTCTCTCTTTTATAGCTGACATTAGAGAAAATTCAGTGAAGCATGAGCTGGTACATCTTCAGGAGACACTTCTTTCTGATATAGTTGGGGAGAAAGACATTAAGTTGGGGAATGTAAAGAAAGGGATTCCAATAATCAAAAGTAGGCTCTGTGAAAAGAAAATTCTTTTGATTTTGGATGATGTCAACAAATTGGAACAATTAAAAGTACTTGCAGGTGGACTTGATTGGTTTGGTTCTGGCAGCAGAATTATTATAACAACTAGAGATATACATCTGCTGCATGTTGGCGGTGTTGAAAGAACCTATGAAGTAGAAGGATTAAATCATAAAGAAGCCCTTGAATTGTTCAGCTGGAATGCTTTCAAAAGAAAACGAGTTAATCGTAGGTATCTGGACATTTCAAAGAGAGTAATACTGCATTCTGATGGCCTTCCATTGTCTCTGGAAATAATAGGTTCTGATTTATTTGGTAAAACAGTGTTGAAATGGAAAGCAGCATTAGATGCTTATGAAATAATTCCTCATGAAAATATTCAGGAAATCCTAAGAGTAAGCTATGATGGCTTAAAGGAATTAGAGAAGAAGATTTTTTTAGACATGGCTTGCTTCTTCAAAGGTTATGTATGA 1353 0.3806 MAKPTSLSSSSCEWMYDVFLSFRGEDTRTGFTGNLYHALREKGVNTFIDDQELRKGEEITPALMRAIQESRIAIVIFSQNYASSTFCLEELVKIMECFKNKGRLVWPVFYQVDPSDVRNQKGNYAEALAKHKRRIRDKDKVKKWRLALHEAASLSGWHFKQGYEYEFIQEIIQEVSKRIKRIPLYVANYPVGLECRVQKVKSLLDVESNDGVHMVGIYGIGGIGKTTLACAVYNFIADQFEGLSFIADIRENSVKHELVHLQETLLSDIVGEKDIKLGNVKKGIPIIKSRLCEKKILLILDDVNKLEQLKVLAGGLDWFGSGSRIIITTRDIHLLHVGGVERTYEVEGLNHKEALELFSWNAFKRKRVNRRYLDISKRVILHSDGLPLSLEIIGSDLFGKTVLKWKAALDAYEIIPHENIQEILRVSYDGLKELEKKIFLDMACFFKGYV 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01039 450 Pfam NB-ARC domain 196 427 IPR002182 GO:0043531
Pumo8g01039 450 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 157 IPR035897 -
Pumo8g01039 450 Pfam TIR domain 16 179 IPR000157 GO:0007165
Pumo8g01039 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 441 IPR027417 -
Pumo8g01039 450 SMART till_3 15 154 IPR000157 GO:0007165
Pumo8g01039 450 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 181 - -
Pumo8g01039 450 Gene3D - 9 182 IPR035897 -
Pumo8g01039 450 Gene3D - 183 342 IPR027417 -
Pumo8g01039 450 ProSiteProfiles TIR domain profile. 14 179 IPR000157 GO:0007165
Pumo8g01039 450 Gene3D - 348 432 IPR042197 -
Pumo8g01039 450 PRINTS Disease resistance protein signature 290 304 - -
Pumo8g01039 450 PRINTS Disease resistance protein signature 383 397 - -
Pumo8g01039 450 PRINTS Disease resistance protein signature 214 229 - -
Pumo8g01039 450 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 446 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01039 Pumo-Chr8 39126361 39127961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01039 16 446 WRKY Transcription Factor Family AT4G12020 28.929 1.38e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01039 - - ccaj:109800328 709.138