Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01035 ATGGAGGGCAGAACAAGCTCTGTGCTCCCACCTGGCTTCAGGTTTCACCCCACTGATGAGGAACTAATTGTGTACTACCTTTGCAATCAAGCCACATCAAGGCCATGCCCTGCATCAATCATCCCAGAAGTGGATATCTATAAGTTTGATCCATGGGAATTACCTGATAAATCAGATTTTGGAGAAAATGAGTGGTACTTCTTTAGCCCAAGAGAGAGGAAGTATCCAAATGGGGTGAGGCCTAATAGAGCAACTGTGTCTGGGTACTTGGAAGGCCACTGGCACTGA 288 0.4653 MEGRTSSVLPPGFRFHPTDEELIVYYLCNQATSRPCPASIIPEVDIYKFDPWELPDKSDFGENEWYFFSPRERKYPNGVRPNRATVSGYLEGHWH 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01035 95 Pfam No apical meristem (NAM) protein 10 95 IPR003441 GO:0003677|GO:0006355
Pumo8g01035 95 Gene3D NAC domain 18 95 IPR036093 GO:0003677|GO:0006355
Pumo8g01035 95 SUPERFAMILY NAC domain 5 89 IPR036093 GO:0003677|GO:0006355
Pumo8g01035 95 ProSiteProfiles NAC domain profile. 9 95 IPR003441 GO:0003677|GO:0006355
Pumo8g01035 95 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01035 Pumo-Chr8 38635426 38635874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01035 1 89 NAC Transcription Factor Family AT1G69490 83.146 7.71e-53 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo8g01035 NAM 5.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01035 - - pvu:PHAVU_003G045600g 192.971