Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01027 ATGACTGATTATTATTATTATTTTGTTTTCAGGAAAATGGCTCAAATTTGTTTGCTCTTGGTGGGGCTTCTCACAATGTTCTCCTCTGCCTATGGCTATGGCTATGGTGGTGGCTGGGTTAATGCACATGCTACCTTCTATGGAGGGAGTGATGCTTCAGGAACAATGGGTGGGGCTTGTGGATATGGGAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTTTGAGCACTGCTTTGTTCAACAATGGACTAAGCTGTGGCTCATGCTATGAGATAAGGTGTGTGAATGACCACAGATGGTGCCTACCTGGCTCCATTATGGTCACTGCCACCAATTTCTGTCCACCAAACAATGCCTTACCAAACAATGCAGGAGGGTGGTGTAACCCTCCTCTGCACCATTTTGACCTCGCTCAACCTGTCTTCCTTCGCATTGCACAATACAGAGCTGGAATTGTGCCTGTGTCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACCATCAATGGCCACTCCTATTTCAACCTGGTCCTCATAACAAATGTAGGTGGTGCTGGGGATGTGCATGCTGTGGCCATCAAAGGGTCAAGAACTGGGTGGATGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACAACTATCTCAATGGCCAAAGCCTCTCCTTCAAGGTCACAACCAGTGATGGCCATACAGCGGTGTCCTACAATGTTGCCCCAGCTGGGTGGTCCTTTGGCCAAACATACACTGGTGCTCAATTCCGCTAG 789 0.4892 MTDYYYYFVFRKMAQICLLLVGLLTMFSSAYGYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDHRWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGHTAVSYNVAPAGWSFGQTYTGAQFR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01027 262 SUPERFAMILY Barwin-like endoglucanases 38 187 IPR036908 -
Pumo8g01027 262 Gene3D - 169 261 IPR036749 -
Pumo8g01027 262 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Pumo8g01027 262 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Pumo8g01027 262 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Pumo8g01027 262 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Pumo8g01027 262 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Pumo8g01027 262 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Pumo8g01027 262 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Pumo8g01027 262 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Pumo8g01027 262 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Pumo8g01027 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Pumo8g01027 262 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Pumo8g01027 262 SMART dpbb_1 74 159 IPR007112 -
Pumo8g01027 262 PANTHER EXPANSIN-A15 18 261 IPR002963 GO:0009664
Pumo8g01027 262 Pfam Lytic transglycolase 74 159 IPR009009 -
Pumo8g01027 262 Gene3D - 28 165 IPR036908 -
Pumo8g01027 262 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Pumo8g01027 262 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Pumo8g01027 262 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Pumo8g01027 262 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Pumo8g01027 262 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Pumo8g01027 262 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Pumo8g01027 262 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Pumo8g01027 262 FunFam Expansin 169 261 - -
Pumo8g01027 262 FunFam Expansin 28 165 - -
Pumo8g01027 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 169 IPR007112 -
Pumo8g01027 262 CDD DPBB_EXPA_N 39 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01027 Pumo-Chr8 38541021 38543091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01027 12 262 Expansin Gene Family AT2G03090 80.478 4.41e-151 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01027 - K20628 gmx:100785757 516.538