Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01023 ATGGCCAGCAACAAGTGTTGCATGATCTCTTCACAACAAAACCAGAATGCCCCCACATGTTGTTACCCTTTTCCTTCTCCTCCTCCAATGGGAGTGGTCTATGCAGACATGATGATGGGGTCTCTCTCTCTTGCCACAGTTTCAAATAATGCTTCTTCATCTCAAGAGAGTAATGGTTATGGCTATGGTTATGCATCTGGGGTAGTGGAAAATGGGAGGAGCACAAGTTGGAGTTTTCCTTTCATGAGGGAGTTTCTTTCCTCAAACTTTGAAGACTGCAGTGATGTAGGGGCTGGGGAGAGTAACAGTAATGAGAAAGCAAACCATAATGGCAAGTTCAGTGAAGAAAGTAACCCTAATGAGAACCCTGTTAGTGGGAAAGAGGTAGATAGTGGACACTCCAAACTTTGTGCAAGAGGGCATTGGAGGCCTGCTGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTTTATGGCCCTCAGAATTGGAACCTCATAGCTGAAAAACTAGAAGGAAGATCAGGGAAGAGTTGTAGGCTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAACAGAAGAGCCTTCAGTGAAGAAGAAGAAGAGAGGCTAATGCAGGCACATAGAATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGGGAACAATCCAGTGCTTACAGGAGGAGGAGAATGAGCCAATCTGTGTACAGAAGAGTGGAGCAAGATCCAACCTTTGTTTGCAGCAGCAGAGATAATGCCTCAACCACAGAACCAGAACCATCACCTTCCTATTCTCTCAATCTCCTCCACAATGGAGTACCACTCACCAATAACATGAATAGTTTCCCATCCTTCCATGGAGGAGCTGCTGGTGGTGGTGGAGTTGTTGAGTTTGGCTCAAATGGTTCTCCACAAAACATGACTAGTGGGAGAGAAGCAATGTCAAACACCCCACATGTTGTTGGCTTGTGTGCTCAAGCTCAACAAGCACCATTTGATTTCTTCTCTGGTGGTGGAAGCAATGACATGATGGGTGAGTCTATGAGCCAGATCAGAAGCAGAGATAGGACCAATGAATCTCACAATCATCAATGCCAGTTATCTGGTTTCTATCCTCATTATCCCCAACAATATTTGATGGCAATGCAACAGCTAGACAACAACAACAGCACTCACACCAATTTTCACAGTTTCTTGAATTCCTCATCAGCATCAACAATAACAGCAACCAAGGAACCATCATCATCACCATGTGTTGCAGCAAAAATCAGAGATAAAGTGGTGAATAATAGTGACCCCCCAGATGGTGTTCCACCCCCATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1416 0.4499 MASNKCCMISSQQNQNAPTCCYPFPSPPPMGVVYADMMMGSLSLATVSNNASSSQESNGYGYGYASGVVENGRSTSWSFPFMREFLSSNFEDCSDVGAGESNSNEKANHNGKFSEESNPNENPVSGKEVDSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMSQSVYRRVEQDPTFVCSSRDNASTTEPEPSPSYSLNLLHNGVPLTNNMNSFPSFHGGAAGGGGVVEFGSNGSPQNMTSGREAMSNTPHVVGLCAQAQQAPFDFFSGGGSNDMMGESMSQIRSRDRTNESHNHQCQLSGFYPHYPQQYLMAMQQLDNNNSTHTNFHSFLNSSSASTITATKEPSSSPCVAAKIRDKVVNNSDPPDGVPPPFFDFLGVGAT 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01023 471 CDD SANT 193 233 IPR001005 -
Pumo8g01023 471 SUPERFAMILY Homeodomain-like 139 232 IPR009057 -
Pumo8g01023 471 ProSiteProfiles Myb-like domain profile. 186 236 IPR001005 -
Pumo8g01023 471 Gene3D - 192 262 - -
Pumo8g01023 471 Gene3D - 139 190 - -
Pumo8g01023 471 FunFam MYB transcription factor 192 262 - -
Pumo8g01023 471 Pfam Myb-like DNA-binding domain 139 185 IPR001005 -
Pumo8g01023 471 Pfam Myb-like DNA-binding domain 191 234 IPR001005 -
Pumo8g01023 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 185 IPR017930 -
Pumo8g01023 471 MobiDBLite consensus disorder prediction 96 130 - -
Pumo8g01023 471 FunFam MYB transcription factor 139 190 - -
Pumo8g01023 471 SMART sant 190 238 IPR001005 -
Pumo8g01023 471 SMART sant 138 187 IPR001005 -
Pumo8g01023 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 240 IPR017930 -
Pumo8g01023 471 MobiDBLite consensus disorder prediction 96 127 - -
Pumo8g01023 471 ProSiteProfiles Myb-like domain profile. 139 185 IPR001005 -
Pumo8g01023 471 CDD SANT 142 183 IPR001005 -
Pumo8g01023 471 PANTHER MYB PROTEIN-RELATED 139 324 - -
Pumo8g01023 471 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01023 Pumo-Chr8 38434426 38436455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01023 103 264 MYB Transcription Factor Family AT1G69560 70.122 4.91e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo8g01023 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01023 K09422 - gmx:100776292 711.835