Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01018 ATGGCCGGTCACCTCATAGACACACACACAACACAGCACAGCACAGCACAAGGACGCAACAACCAAAACAATGTTCCAGATCCTTCCACAACATTCTCTCAGTATCATATCAGTGGGCGCAACCCCCCCTCCTCTGTTTTCTCCTTATATTCATTCCCCTTTTCACCTTCTTTTTCATTCTCCTCCCTCAATTATTCCACAATTTCCCTCAATTATTCCCATCATCACCCACTTAATTCCTTCTCTCTCAAGCAAAAGTTTTATTCTCCCAGCGTTCTGAATCGAAATCGATGGCTTCAGAGACAGAGGTGCCAGATATTTCTATTTCCTCTGTTTTCGAGCGCTTTCGAGCGAAACAGAGACATGTCTCTGTTTTTGCCCTTTCTCTTCGGCTTCTCTGACGCCATCCCAGGACGAGATAGCGACGACCCAGATCACGAAACGGGGAGCACTGAAGGCTCCCAGCGTCAAAGAATCATCTTGGTGAACCCCTTCACTCAGGGCATGGTGGTGATCGACGGTGGCTCAAGCCTTGAAGCTCTGTTTCGCGAACTTGCTAGTGGAAAAGGTGGTCGACCACCGGCTTCTAGGGAGTCCATAGATGCCATGCCGAGCGTGGAAATTGGAGAAGGGTGTGAGGATTCGGAGTGTGCGATTTGTTTGGAGGAGTTTGGGGTTGGTGGGGTGGCAAAGGAGATGCCTTGTAAGCATAGGTTTCATGGTGATTGTATTGAGAAGTGGTTGGGGATGCATGGGTCTTGCCCTGTGTGTAGGTATGAGATGCCTTTGGAGGAGATGAATTGGGGGAAGAAGAGGGAGGAGGAAGGGGGAGAGAGGAGAAGCAGTGGTGGTGGTGAGGTTTGGGTTAGTTTTTCTTTCAATAGGAGTAGGAGAGGCGAAGATCATGATCAAGCTGCTACTGCTGATTCAAATGATGATTCTTCATCAACTCATGGAGATGATGCTGTAGAGAGTTAG 978 0.4857 MAGHLIDTHTTQHSTAQGRNNQNNVPDPSTTFSQYHISGRNPPSSVFSLYSFPFSPSFSFSSLNYSTISLNYSHHHPLNSFSLKQKFYSPSVLNRNRWLQRQRCQIFLFPLFSSAFERNRDMSLFLPFLFGFSDAIPGRDSDDPDHETGSTEGSQRQRIILVNPFTQGMVVIDGGSSLEALFRELASGKGGRPPASRESIDAMPSVEIGEGCEDSECAICLEEFGVGGVAKEMPCKHRFHGDCIEKWLGMHGSCPVCRYEMPLEEMNWGKKREEEGGERRSSGGGEVWVSFSFNRSRRGEDHDQAATADSNDDSSSTHGDDAVES 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01018 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 263 IPR013083 -
Pumo8g01018 325 MobiDBLite consensus disorder prediction 1 33 - -
Pumo8g01018 325 FunFam E3 ubiquitin-protein ligase RNF181 183 264 - -
Pumo8g01018 325 Pfam Ring finger domain 216 258 IPR001841 -
Pumo8g01018 325 SMART ring_2 217 257 IPR001841 -
Pumo8g01018 325 MobiDBLite consensus disorder prediction 7 33 - -
Pumo8g01018 325 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
Pumo8g01018 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 137 262 - -
Pumo8g01018 325 MobiDBLite consensus disorder prediction 292 325 - -
Pumo8g01018 325 SUPERFAMILY RING/U-box 212 263 - -
Pumo8g01018 325 MobiDBLite consensus disorder prediction 295 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01018 Pumo-Chr8 38339082 38340256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01018 112 301 C3H Transcription Factor Family AT1G26800 57.068 2.88e-64 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01018 - - gmx:100819587 332.028