Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01009 ATGTTGAATGTTGATGTAATTGGGAACAAAAAAAGGAAGAGGTGTGGGAGGGTTTTCAGGTTCAAGAACTTTGGTGAACCTGGATACCCTGTTATGTTTACTGGGCCATTTCGTGAGAACGTGAATGCATTACTTGAGTATGCAAATTTGGAGAGTAATTTAAGCATGGAAATGCCAATGTGGTCTTTTCAACTTGAAGTTCATCACCACCCACCTTTACATATCTTCTTGTTTGTGATTGAAGAGTCAATAGAGGCAGCACTGAATCGTCATTGCAAGCATTGTCAATACGTTGCACAGGCTGGGGCAACCATTTCATTTGCAATAAGAAGTATCACTTCGTGTTACCCTCGAAGGAGGCACTGGGTACCTTGCACGAGCTGTGAAGGATGCTGTGATGCAATTGCTACAATTAATAATGGTAAGTCCAAATTAATTGAATTACAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTATGTGTCAATGGATTGGAAATGGGTTCGAATTTGGCTGGGAACCAGATCATGGAGTTTTGGAACCGTTTGTGCAACGGATTGCAAGCAAGGAAGGTGAGTTTGAATGACATTTCACAAAAGAGAGGAATGGAACTGAGACTTGTGAATGGAATAGCATACAATGAGTCATGGTTTGGTCGTTGGGGTTACCAATTTGGTCGAGGATGCTTTGGTGTAACTCAATCAATGTACCATAAGGCCATACGAGCAATAAGAAGCATGCCACTATACTTGATCATACACCACGTTGGAAATTCCAACCATGGCATTCCACTCATATTTTCAAGGTACCAAACACTTTCAGATCAATCCTTAGTGACCCTTGGTGACCTATTTTGTTACATGTTAGACCTCAAATCACACCTTCCCCGCGAAACATGTATTAGTTCCTATAGCACAAGTGCCTTGGTTGAGACCAATTGTCGTTGGTCCCCTAAAAGGATTGAGATGGCAACAAGGGTCATTGTTGAGGCCTTGAAAAGAACAGAGTTTAGATGGGTTTCAAGGCAAGAAGTTAGAGATGCTGCTCGTGCATACATTGGTGACACAGGTTTGCTAGATTTTGTGTTGAAGTCACTAGGAAACCATGTTGTTGGAAACTACTTGGTTCGTCGAAGTTTGAACCCTGTGACCAAAGTCTTGGAATATTGCTTAGAAGACATTTCTAATGAAGGCCTAGTTATGAGTAACAAAGTGAAGGACAAGTACAAGATCACAAGGACTCAACTAATGAAGGACATGCTTTATTTGTATAAGTATATTCTTATAGACCCAAAACCAATGATGGGATCAGAATTTCACTCAGCTATACCATTGGCAGCTAGGATAATTCTTGACACCAAGTATTTTATAAAAGATTACTTTGGAGATGTTCCTTACCAAGTTGAATTAGGCTCGAATGATAAACACAACCTTTATTGTACAATTTTGTTGAGGAACAATGCTAATCGTGATGATTACTTAAACAAGCCCATTATGCAACCCTATGAATGTATCACATTGAAAAGAAATGCTACTATCAATGACTTGAAGCTAGAAGTTGAAAGGAATTTTAGAGAAATCTATTGGGGGTTAAGGAGTTTTGTGGTGGAATCAATTGGGAATTTAAGTGCCAATAATGGGATAGAAATGGTTTTTGAGCTAATTGAAGTGGGTGGAAAAGTTGTACTTGAGGGCTGGTATGGTGACATGAGAATAAACATGATTGAGCAAATATGTGAAAGTGATCCAAATAGTGGTATAGTGGACTGCACTTGTGGAACTATAGAAGATGATGGTGAAAGGATGGTCTCATGTGATATTTGTGAAATTTGGCAACATACTAGGTGTGTTCGAATTCCAAACGACGAAGAGATTCCTCATATTTTTCTATGTAAAAAGTGTGAGCAAGAAATTGTTTTGTTTCCTTCCTTGCCATAG 1956 0.3931 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFTGPFRENVNALLEYANLESNLSMEMPMWSFQLEVHHHPPLHIFLFVIEESIEAALNRHCKHCQYVAQAGATISFAIRSITSCYPRRRHWVPCTSCEGCCDAIATINNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMEFWNRLCNGLQARKVSLNDISQKRGMELRLVNGIAYNESWFGRWGYQFGRGCFGVTQSMYHKAIRAIRSMPLYLIIHHVGNSNHGIPLIFSRYQTLSDQSLVTLGDLFCYMLDLKSHLPRETCISSYSTSALVETNCRWSPKRIEMATRVIVEALKRTEFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNEGLVMSNKVKDKYKITRTQLMKDMLYLYKYILIDPKPMMGSEFHSAIPLAARIILDTKYFIKDYFGDVPYQVELGSNDKHNLYCTILLRNNANRDDYLNKPIMQPYECITLKRNATINDLKLEVERNFREIYWGLRSFVVESIGNLSANNGIEMVFELIEVGGKVVLEGWYGDMRINMIEQICESDPNSGIVDCTCGTIEDDGERMVSCDICEIWQHTRCVRIPNDEEIPHIFLCKKCEQEIVLFPSLP 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01009 651 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 644 - -
Pumo8g01009 651 SUPERFAMILY FYVE/PHD zinc finger 587 643 IPR011011 -
Pumo8g01009 651 ProSitePatterns Zinc finger PHD-type signature. 596 640 IPR019786 -
Pumo8g01009 651 SMART PHD_3 595 641 IPR001965 -
Pumo8g01009 651 Pfam PHD-finger 596 642 IPR019787 -
Pumo8g01009 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 644 IPR013083 -
Pumo8g01009 651 CDD PHD_MMD1_like 595 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01009 Pumo-Chr8 38241332 38246434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01009 10 651 PHD Transcription Factor Family AT5G22260 48.657 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo8g01009 PHD 2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01009 K26271 - gmx:100780210 1192.18