Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01008 ATGAGCGATCACTTGGTGGTGTTCGTTGACCGTCTCGCGCGCCCTGTCGCCGTTGATCCGGTGGCGCAGCCGGCGCAGCTGCCTTCCGAGCCCTCTCCGCCACCGGCATCGATGGATGCCGCCGCCGCCGGGAGCTCCGGCACCGCTGCGGCAGAGGATCGCGACGGCGAGGGCGGCGGCGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAACTTGGAGACGCCCTGCGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGTGATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCATATCAACCTGGGTATACTGCCCCCCCACCGCGTCCTAATCCTGAAGAAACTACCATTGATATAGGAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACTCTTGGCGATTGCAGAGGCAGAACGTCAGTTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAATGCCAGTGGAGCTACATTTTGCCGCTCAGCTGCTTTAATTTTAATGGCCCTTCTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATAATTCTGATGATGATCCATCCAGCTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTATTACCATGCTACATTATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGGCAGCGTAGAGGTCTACAGTTTGCAATAGCACCAGGACCACCCACAGTTCACCAGGAACAAGTGTAA 870 0.546 MSDHLVVFVDRLARPVAVDPVAQPAQLPSEPSPPPASMDAAAAGSSGTAAAEDRDGEGGGEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGATFCRSAALILMALLLLRHALSVSDGDNSDDDPSSFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPTVHQEQV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01008 289 MobiDBLite consensus disorder prediction 22 61 - -
Pumo8g01008 289 FunFam RING/FYVE/PHD zinc finger protein 59 127 - -
Pumo8g01008 289 SMART ringv_2 70 117 IPR011016 GO:0008270
Pumo8g01008 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 126 IPR013083 -
Pumo8g01008 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 251 IPR033275 -
Pumo8g01008 289 Pfam RING-variant domain 71 116 IPR011016 GO:0008270
Pumo8g01008 289 Pfam Protein of unknown function (DUF3675) 122 241 IPR022143 -
Pumo8g01008 289 Coils Coil 159 179 - -
Pumo8g01008 289 CDD RING_CH-C4HC3_MARCH 71 117 - -
Pumo8g01008 289 ProSiteProfiles Zinc finger RING-CH-type profile. 63 123 IPR011016 GO:0008270
Pumo8g01008 289 SUPERFAMILY RING/U-box 69 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01008 Pumo-Chr8 38229128 38234514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01008 70 146 C3H Transcription Factor Family AT2G37950 37.079 3.88e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01008 - - gmx:100812998 447.973