Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01006 ATGGACCTAACCAAGGACACCAACACCACCATAGACACAAATTCTCAAACCCCTCCACAACCCACCACCACCACCGCCAACGGCTACCTCAAGCACCACCACCACCACCACTCCACCACCGTGTCACCGCCGTCACAGCCACCGTCCACGGCGGTTTCCTACAAGGAGTGCCTCAAAAACCATGCAGCCAGCATAGGTGGCCACGCGCTTGATGGGTGCGGTGAATTCATGCCCTCCTCTTCCTCCAACCCCAATGAACCACGCTCGCTAACGTGCGCCGCGTGTGGATGCCACCGTAACTTCCACCGCCGCGACACACAGGATTATCATCACCGCCACTCCAACAACCCCAGGCCCAATTTCATAAGCTTCTACCACTCACCGCCACCATCTCATCACGGGCCGGGTCCGAGCCCGAGTCCAAGCCCAAGCCCGATGTCAAGCCCGAGCCCACCGCCAATCTCTCATCATTTCCCACCTTCCTCCCACCATTTCCAAGGCCCGAGATCGGCCTACGGGCTCTCGGGCCTTGGAAATGAACACCATCACATGAGTTTTAATTTTAACTCTTCTTCCCACACGGAACACCACACGGAACACCACCAGAGTGGGAAGAAGAGGCACAGGACCAAGTTCAGCCATGAACAGAAAGAAAAAATGCACAATTTCGCTGAGAAATTGGGCTGGAAAATGCAGAAAGGGGATGAAAATACGGTGCAAGAGTTCTGCAATGAGATTGGCGTTTCAAGAGGGGTCTTCAAGGTGTGGATGCACAACAATAAGAACAACACTGCTTGCAGGAAGAGATCGTTGGAACCAGGTGAAAAGATCAATGGCACCGGTAGTGATAGTACTAATAATAATAATCCTTACAACACAAATGGCACCAACGATGACGCTCATTGA 906 0.5298 MDLTKDTNTTIDTNSQTPPQPTTTTANGYLKHHHHHHSTTVSPPSQPPSTAVSYKECLKNHAASIGGHALDGCGEFMPSSSSNPNEPRSLTCAACGCHRNFHRRDTQDYHHRHSNNPRPNFISFYHSPPPSHHGPGPSPSPSPSPMSSPSPPPISHHFPPSSHHFQGPRSAYGLSGLGNEHHHMSFNFNSSSHTEHHTEHHQSGKKRHRTKFSHEQKEKMHNFAEKLGWKMQKGDENTVQEFCNEIGVSRGVFKVWMHNNKNNTACRKRSLEPGEKINGTGSDSTNNNNPYNTNGTNDDAH 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01006 301 MobiDBLite consensus disorder prediction 108 212 - -
Pumo8g01006 301 MobiDBLite consensus disorder prediction 1 52 - -
Pumo8g01006 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 105 IPR006456 -
Pumo8g01006 301 NCBIfam homeobox domain, ZF-HD class 205 262 IPR006455 -
Pumo8g01006 301 FunFam Zinc-finger homeodomain protein 2 192 266 - -
Pumo8g01006 301 MobiDBLite consensus disorder prediction 277 301 - -
Pumo8g01006 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 263 - -
Pumo8g01006 301 SUPERFAMILY Homeodomain-like 191 263 IPR009057 -
Pumo8g01006 301 Gene3D - 189 267 - -
Pumo8g01006 301 MobiDBLite consensus disorder prediction 263 301 - -
Pumo8g01006 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Pumo8g01006 301 MobiDBLite consensus disorder prediction 130 158 - -
Pumo8g01006 301 MobiDBLite consensus disorder prediction 1 28 - -
Pumo8g01006 301 Pfam ZF-HD protein dimerisation region 52 106 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01006 Pumo-Chr8 38212016 38213393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01006 51 278 ZF-HD Transcription Factor Family AT1G69600 46.725 2.98e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo8g01006 ZF-HD_dimer 7.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01006 - - gmx:100817446 355.525