Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01003 ATGAGCAGCGGCGGCGGATCGTCGGACACGGCGGCGGCGAAGGAGAAGGAGAAGGCACGTGTGAGTCGAACGTCGCTGATTCTGTGGCACGCGCACCAAAACGACGCCGCGGCGGTGCGGAAGCTTCTCGAGGAGGATCCGTCGCTGGTGAAGGCTAGGGATTACGACAGCCGCACGCCGCTGCACGTGGCGTCGCTTCACGGATGGGTCGAGGTTGCTAATTGCTTGATCGAATTTGGTGCTGATGTGAACGCTCAGGATCGTTGGAAAAACACTCCTCTGGCTGATGCAGAAGGAGCTAAAAGAGCTGCGATGATTGAGCTTTTGAACTCACATGGAGGCTTGTCTTATGGACAAAATGGAAGCCATTTTGAGCCAAGGCCTGTTCTTCCCCCATTGCCTAACAAGTGTGATTGGGAAGTTGACCCTTCTGAGCTGGACTTCTCCAATTCAGTTTGCATTGGAAAGGGATCTTTTGGTGAGATTTTAAAAGCCTATTGGCGTGGAACACCTGTTGCTGTCAAACGTATTCTTCCATCTCTGTCAGATGATAGATTGGTCATTCAGGACTTCAGGCATGAGGTTAATTTACTTGTGAAGCTTCGACACCCTAATGTTGTTCAATTTCTTGGAGCTGTTACTGACAGGAAGCCTCTTATGTTAATTACTGAGTATCTGAGAGGAGGTGATCTTCATAAATACCTCAAGGACAAAGGTGCACTTAGTCCTTCAACAGCCATCAACTTTGGCTTGGATATTGCTAGAGGGATGGCCTATCTTCACAATGAACCAAATGTTATCATTCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAACTCTAGTGCTGACCATTTAAAAGTTGGTGATTTTGGACTTAGTAAGCTTATTAAGGTCCAAAGTTCTCATGACGTATACAAGATGACGGGTGAAACTGGAAGCTACCGCTACATGGCTCCTGAAGTTTTCAAACACCGGAGATATGATAAGAAGGTTGATGTGTTCTCCTTTGCAATGATTCTGTATGAGATGCTTGAAGGTGAACCCCCTTTTTCAAATTACGAACCTTATGAAGGAGCCAAATATGTGGCAGAAGGACACAGGCCTTCTTTTAGGGCAAAGGGTTATACCCCTGAACTGCGAGAGTTAACAGAGCAGTGTTGGGCTGCAGACATGAATCAAAGACCTTCATTCATAGAGATCCTTAAACGGCTTGAAAAGATCAAGGAAAATTTGCCTTCAGATCATCACTGGCACTTGTTCACTTCATGA 1275 0.4635 MSSGGGSSDTAAAKEKEKARVSRTSLILWHAHQNDAAAVRKLLEEDPSLVKARDYDSRTPLHVASLHGWVEVANCLIEFGADVNAQDRWKNTPLADAEGAKRAAMIELLNSHGGLSYGQNGSHFEPRPVLPPLPNKCDWEVDPSELDFSNSVCIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNVVQFLGAVTDRKPLMLITEYLRGGDLHKYLKDKGALSPSTAINFGLDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLIKVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVFSFAMILYEMLEGEPPFSNYEPYEGAKYVAEGHRPSFRAKGYTPELRELTEQCWAADMNQRPSFIEILKRLEKIKENLPSDHHWHLFTS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01003 424 ProSiteProfiles Protein kinase domain profile. 148 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01003 424 FunFam Integrin-linked protein kinase family 227 422 - -
Pumo8g01003 424 Pfam Protein tyrosine and serine/threonine kinase 153 406 IPR001245 GO:0004672|GO:0006468
Pumo8g01003 424 Gene3D Transferase(Phosphotransferase) domain 1 228 420 - -
Pumo8g01003 424 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 74 411 - -
Pumo8g01003 424 ProSitePatterns Protein kinases ATP-binding region signature. 154 175 IPR017441 GO:0005524
Pumo8g01003 424 SMART ANK_2a 56 85 IPR002110 GO:0005515
Pumo8g01003 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Pumo8g01003 424 Pfam Ankyrin repeats (3 copies) 23 87 IPR002110 GO:0005515
Pumo8g01003 424 CDD STKc_MAP3K-like 154 406 - -
Pumo8g01003 424 SUPERFAMILY Ankyrin repeat 27 114 IPR036770 -
Pumo8g01003 424 SUPERFAMILY Protein kinase-like (PK-like) 147 419 IPR011009 -
Pumo8g01003 424 Gene3D Phosphorylase Kinase; domain 1 133 227 - -
Pumo8g01003 424 SMART serkin_6 148 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g01003 424 ProSiteProfiles Ankyrin repeat region circular profile. 56 88 - -
Pumo8g01003 424 FunFam serine/threonine-protein kinase STY46-like 141 227 - -
Pumo8g01003 424 PIRSF ILK 1 424 - -
Pumo8g01003 424 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Pumo8g01003 424 Gene3D - 4 123 IPR036770 -
Pumo8g01003 424 PRINTS Tyrosine kinase catalytic domain signature 223 236 IPR001245 GO:0004672|GO:0006468
Pumo8g01003 424 PRINTS Tyrosine kinase catalytic domain signature 261 279 IPR001245 GO:0004672|GO:0006468
Pumo8g01003 424 PRINTS Tyrosine kinase catalytic domain signature 377 399 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01003 Pumo-Chr8 35959119 35965509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01003 2 424 MAP Kinase Kinase Kinase AT1G14000 83.333 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Pumo8g01003 PK_Tyr_Ser-Thr 2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01003 - - gmx:100789273 827.394