Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00944 ATGGCGTCGCAAATGGCGATCCTGCTCCGCACGCGCTCCCTCCTCTCCTCGAAACCCTCCACCCTCATCAAAACCATAACCACATTCCCCTTCCTCTCACAGGAGCCCCAATTAGTGGACCCCACACCCCCTTCCCCTTCAACCTCACTCCCTCCCAATCCCGCCTCAGGAAGCCCCCTCTACAACGAAAACTGGCGCAGCCCAATCCCTCCACCACCACCACCCCCTTCTTCCTCCTCCGCCGCCACCTCCCACGCCCTCGCCCCCGTGGGATTCTACAACCGCGCCACCTCCGACACCTACGACCCCCGCGCCCTCCTCGACCTCTTCGGCGACTGGATGGCCTCGCAGCAGTGGCACGACGTCAAGCACCTCTTCGAGGCCTGGGTCAGGTCCCTCGACAAGACGGGGAAGCCCAACAAGCCCGATGTGAACCTCTTCAACCACTACCTCCGCGCCAACCTCATGCTCGGCGCCTCCGCCGCCGAGCTCCTCGACCTCGTCGCGCAGATGGCGGAGTTCAACGTCGCCCCCAACACCGCGTCGTACAACCTCGTCCTCAAGGCCATGTGCCAGGCCCGCGAAACCCTCGCCGCCGACAAGCTCCTCCAACGGATGCTGCAGTCAGGAAATGATGCTCTCCCTGACGACGAATCCTATGACTTAGTCATAGGAATGCTCTTTTCCACTGACCAGATTGATACTGCGTTCAAATATATAGATTTAATTTTGAAATCTGGTAACGTGTTGTCAATGAAGGTATTTATGAACTGTGTGTGGAGTTGTGTCAATAAGGGAAGGCTTGATACATTGGTGACAATAATTGAAAGGTGCAGGGCATCAGATCAAAACAAAGCTCTTTGCCCCAACTGGGACTTGTGCAATTTTATTGTTGAAACTGCAACACGAGAAGATAATAGCAAATTAGCTTTTTATGGCCTGGAGTTTATGGCTAAATGGATTGTAAAGGGTGAACGTCAAAGACCCTCTATATATCTCTCTGTAGATGAAGGTTTAGTTCTGTCAGCTCTTTTGACTGCTGGTAGAACCTATAATTCTGAGCTGCTAGGGGCATCATGGGCTGTTTTGGACCGCTCATTGCGTAAAAAGAAAGCTCCTAATCCAGAGTCATATCTTGGAAAGATATATGCGCTTGCATCATTGGGGAATCTACAAAAGGCTTTTGGTACTCTGAATGAATATGAGTCAGCTTATGGAGACTCTGGTCAAGAAGCCGAAGACTTGTTCTGCCCATTTACATCATTACATCCATTGGTTGTGGCATGCTCCAAGAAGGGTTTTGAGACTCTAGATAATGTTTATTTTCAACTGGAGAATTTAAACCGTGCAGAGCGTCCTTATAAATCTGTTGCTGCACTAAACTGTGTCATTTTAGGATGTGCAAACATATGGGACCTTGATCGTGCTTACCAAACTTTTGAATCAATTGGATCTACTTTTGGGCTGATCCCTGATATTCATTCATACAATGGGCTGATGTATGCCTTTGGGAAGCTCAAGAAGACACATGAAGCTTCAAGGGTGTTTGAGCACCTAGTGAGTTTGGGTCTCAAGCCTAATGCAAAATCATATTCTCTGCTTGTTGATGCCCACCTGATTAACCGGGATGTCAAATCTGCTCTGGCAGTGATTGATGATATGAGAGCTGCTGGATTTGAACCGTCAAAAGAGATGCTAAAAAAGGTCAGACGGCGATGCATGCGAGAAATGGACTATGAAAGTGATGACAGAGTGCAATCACTGGCTAATTCCTTGAATTACCGATTGGGTTCAGAAGGCCGACGGGACACTCTGTTTACTATTGATTACAGTAGGGATTATGCTTGA 1848 0.4913 MASQMAILLRTRSLLSSKPSTLIKTITTFPFLSQEPQLVDPTPPSPSTSLPPNPASGSPLYNENWRSPIPPPPPPPSSSSAATSHALAPVGFYNRATSDTYDPRALLDLFGDWMASQQWHDVKHLFEAWVRSLDKTGKPNKPDVNLFNHYLRANLMLGASAAELLDLVAQMAEFNVAPNTASYNLVLKAMCQARETLAADKLLQRMLQSGNDALPDDESYDLVIGMLFSTDQIDTAFKYIDLILKSGNVLSMKVFMNCVWSCVNKGRLDTLVTIIERCRASDQNKALCPNWDLCNFIVETATREDNSKLAFYGLEFMAKWIVKGERQRPSIYLSVDEGLVLSALLTAGRTYNSELLGASWAVLDRSLRKKKAPNPESYLGKIYALASLGNLQKAFGTLNEYESAYGDSGQEAEDLFCPFTSLHPLVVACSKKGFETLDNVYFQLENLNRAERPYKSVAALNCVILGCANIWDLDRAYQTFESIGSTFGLIPDIHSYNGLMYAFGKLKKTHEASRVFEHLVSLGLKPNAKSYSLLVDAHLINRDVKSALAVIDDMRAAGFEPSKEMLKKVRRRCMREMDYESDDRVQSLANSLNYRLGSEGRRDTLFTIDYSRDYA 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00944 615 PANTHER OS07G0599000 PROTEIN 1 614 IPR044605 -
Pumo8g00944 615 Gene3D Tetratricopeptide repeat domain 114 326 IPR011990 GO:0005515
Pumo8g00944 615 Pfam Pentatricopeptide repeat domain 141 190 IPR002885 -
Pumo8g00944 615 Pfam PPR repeat family 491 537 IPR002885 -
Pumo8g00944 615 MobiDBLite consensus disorder prediction 37 53 - -
Pumo8g00944 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Pumo8g00944 615 MobiDBLite consensus disorder prediction 65 79 - -
Pumo8g00944 615 MobiDBLite consensus disorder prediction 34 83 - -
Pumo8g00944 615 NCBIfam pentatricopeptide repeat 182 210 IPR002885 -
Pumo8g00944 615 NCBIfam pentatricopeptide repeat 494 528 IPR002885 -
Pumo8g00944 615 NCBIfam pentatricopeptide repeat 530 562 IPR002885 -
Pumo8g00944 615 Gene3D Tetratricopeptide repeat domain 338 600 IPR011990 GO:0005515
Pumo8g00944 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Pumo8g00944 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00944 Pumo-Chr8 34977197 34982986 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00944 356 562 Glycosyltransferase AT1G05670 22.488 3.87e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00944 - - gmx:100784647 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00944 8 34977197 34982986 Pumo8g00944 8 34977197 34982986 ECH