Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00905 ATGGCGATGATGCAAGGTGTGCAGAAGAACACGCTGTACGTGGGAGGGTTAGCAGAAGAAGTGAACGAGTCCATTCTCCACGCGGCGTTCATTCCCTTCGGCGACATCAAGGACGTGAAGACGCCGTTAGACCAGGCCACGCAGAAGCACCGCTCTTTCGGCTTCGTCACTTTTCTTGAGCGGGAAGACGCCGCCGCCGCCATGGATAACATGGACGGCGCCGAGCTCTACGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAACGCATCAAGGGAGGGGAGCAGGGCTGGGCCGCCCAGCCCATTTGGGCGGATGCGGATACCTGGTTTGAGCGGCAGCAGCAAGAGGAGGAGATGCGGCGGATTGAGGCGGAGAATCGCGCGGCGATGCAGGCGGCGGAAGACTTGCACCGGAAGCAAGTGGCGGAGCAACGAGAGGGAGAGAAGGAAGAGGAAATTGAGATCAAGGATGATCCTATGGCCAAGGCTGAAGCGGAGGTTCTTCAACAGAATGATAACCAATGA 528 0.5928 MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDLHRKQVAEQREGEKEEEIEIKDDPMAKAEAEVLQQNDNQ 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00905 175 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Pumo8g00905 175 MobiDBLite consensus disorder prediction 131 164 - -
Pumo8g00905 175 MobiDBLite consensus disorder prediction 131 175 - -
Pumo8g00905 175 PANTHER ATPASE E1 2 174 - -
Pumo8g00905 175 Gene3D - 3 154 IPR012677 -
Pumo8g00905 175 CDD RRM_PPIE 12 86 IPR034168 GO:0003723
Pumo8g00905 175 SMART rrm1_1 11 84 IPR000504 GO:0003723
Pumo8g00905 175 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Pumo8g00905 175 FunFam Peptidyl-prolyl cis-trans isomerase 2 155 - -
Pumo8g00905 175 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Pumo8g00905 175 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00905 Pumo-Chr8 34358565 34361249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00905 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 4.00e-11 58.5