Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00899 ATGCTCACCTCGAGGCAATCCTTGTACATCTCTTCCTCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCGTTGTTTTGTATCATTCTCCTCCAAGTTACATTTCTCTATGGCCTTGCCTTCTCTGCCAACCATGAAACCTCAACACTCTTCACTTGGCTCCATAGTTCTTCTGCATCACCACCCCCTCCTTCTTTCTCTAACTGGAACATTCTTGATTCTAATCCATGCAACTGGACATCCATAACATGCTCCTCACTAGGCTTTGTCACAGAAATCAACATACAATCCATCCCTCTAGAGCTTCCTATACCCTCCAACCTCTCTTCATTTCACTCTCTCCAGAAGCTTGTCATATCTGATGCCAATCTCACTGGAACCATCCCTTCAGACATTGGTGACTGCTCTTCCCTCACTGTCATTGACCTCAGCTCCAACAACCTTGTTGGCTCTATTCCTGCAAGCATTGGCAAGCTCCAGAACCTGCAGAACTTGTCCTTGAACTCTAACCAGCTCACTGGAAAAATCCCAGCTGAGTTAAGCAACTGCATTGGCCTAAAAAATCTGCTCCTTTTTGATAATCAGATAAGTGGGACTGTCCCACCTGAGCTGGGGAAGTTGTCACAACTTGAGTCCCTAAGAGCAGGAGGGAACAAAGATATTGTTGGGAAGATTCCTGAAGAGCTTGGAGAATGCAGCAATTTGACTGTGTTGGGGCTGGCTGATACCAGAATATCTGGTTCTTTGCCTGCTTCTTTGGGTAGACTTTCAAAGCTTCAGACACTGTCCATCTATACTACCATGCTGTCTGGTGAGATTCCACCTGAGTTAGGTAACTGTTCTGAACTTGTTGACTTGTTCCTATATGAAAATAGCCTATCAGGGTCTATTCCATCTGAGCTTGGTAAGCTCAAGAAGCTGGAACAGTTGTTTTTGTGGCAGAATGGTCTTGTGGGGGCCATCCCAGAAGAGATTGGTAACTGTACAAGCTTGAGAAAAATTGATTTCTCTTTGAATTCTCTGTCTGGGACTATACCTGTGTCTTTGGGGGGTCTTTTGGAGCTTGAAGAGTTTATGATTAGTGATAACAATGTGTCTGGTTCAATCCCTGCCAGTCTTTCAAATGGTAGAAATCTTCAACAGTTGCAAGTTGACACAAACCAGCTCTCAGGCTTGATTCCACCAGAGCTTGGGCAGTTGTCAAACCTCATGGTGTTCTTTGCTTGGCAGAACCAGCTTGAGGGAAGCATTCCCTCCTCTTTGGGGAACTGTAGTAACCTTCAAGCACTAGACTTGTCGCGCAATGCGCTCACCGGTAGTATTCCTGTTGGCCTATTCCAGCTCCAGAACCTCACAAAACTGCTTCTGATTTCCAATGACATATCAGGTTTCATACCAAATGAAATAGGCAGTTGCAGCTCTCTTATAAGGTTGAGGCTTGGAAACAACAGGATTACTGGTAGCATTCCCAAGACAATAGGCAACCTCAAGAGGTTGAACTTTTTAGACCTCTCTGGGAACCGCCTCTCCGGTCCAGTGCCTGATGAGATTGGAAGCTGCACTGAGCTGCAAATGATAGACTTCAGCAGCAACAACTTGGAAGGTCCTTTGCCTAATTCTTTGTCTTCACTATCTGCAGTTCAGGTGTTGGATGCATCTTCCAACAAATTTTCAGGTCCTCTACCTGCGAGTTTGGGCCGTCTTGTTTCTCTGAGTAAGCTAATCCTTAGCAATAACTTGTTTTCTGGACCTATTCCTGCATCACTGAGCCTGTGTTCAAATCTCCTACTGCTTGATCTTAGTAGCAACAAGCTCAGTGGAAGCATACCAGCCGAGCTCGGCCGAATTGAGACACTAGAAATTGCTCTTAATCTCAGTTGCAATTCACTCAGTGGAATACTCCCAGCTCAGATATCTGCTCTTAACAAGCTTTCCATATTGGACATCTCACACAACCAGTTGGAAGGAGATTTGCAACCTCTTGCAGAGTTAGACAACCTTGTCTCCCTCAATGTTTCTTACAACAAATTTTCTGGCTGTCTTCCAGATAACAAGCTTTTCAGGCAGTTGGCATCAAAAGACTTCACTGAAAATCAAGGGCTCTCATGCTTTATGAAGGATTCTGGCAAGACTGGTGTGGCCTTGAATGAAAATAATGTAAGGAAGTCGCGAAGGCTTAAGTTAGCCATTGGATTGCTGATAGCCTTGACAGTAATAATGATTCTTATGGGGATAACTGCTGTGATCAAAGCAAGAAGAACCATTAGAGATGATGATTCAGAATTGGGGGACTCGTGGCCATGGCAATTCATACCTTTCCAGAAGCTAAACTTTTCAGTGGAACAAGTACTGAGATGTTTGATTGATAGAAACATAATTGGGAAGGGGTGTTCTGGTGTTGTTTATAAAGCTGAAATGGATAGTGGTGAAGTCATTGCTGTGAAGAAATTGTGGCCAACAACAATTGATGAAGGAGAGGCATTTAAGGAAGAAAAAAGTGGAGTTCGTGACTCGTTCTCGGCTGAGGTCAAGACCCTTGGCTCAATCCGTCATAAGAACATTGTCAGATTCTTGGGGTGCTGTTGGAACAGAAGAACAAGATTGCTTATTTTCGATTACATGCCGAATGGAAGTTTGAGTAGTCTACTTCATGAGAGAACTGGAAATTCTCTGGAATGGGAACTTAGGTACAGAATCTTGTTAGGTGCTGCAGAAGGCCTTGCATATCTACATCATGACTGTGTCCCTCCTATAGTTCACAGAGATATCAAAGCCAATAACATCCTCATTGGTCTTGAATTTGAGCCTTACATTGCTGACTTTGGCTTGGCTAAACTTGTTGATGATGGTGATTTCGGTCGTTCTTCCAATACAGTTGCTGGTTCCTATGGATATATTGCTCCAGAATATGGCTACATGATGAAGATCACAGAGAAGAGTGATGTTTATAGCTATGGTGTAGTTCTATTAGAAGTCTTGACAGGTAAGCAACCAATTGATCCAACCATTCCAGATGGTCTACATGTTGTTGATTGGGTGAGACAGAAAAAGGGTCTTGAAGTGCTTGATCCTAGCTTACTCTCTAGACCAGAATCAGAAATAGAGGAAATGATGCAGGCATTGGGAATAGCCTTATTGTGTGTGAATTCATCCCCAGATGAAAGGCCAACAATGCGAGATATCGCGGCAATGCTCAAGGAGATAAAGCATGAAAGGAGGAGTATGCAAAATTTGATGTGCTTCTAA 3243 0.4357 MLTSRQSLYISSSSPSPSSSSSSLFCIILLQVTFLYGLAFSANHETSTLFTWLHSSSASPPPPSFSNWNILDSNPCNWTSITCSSLGFVTEINIQSIPLELPIPSNLSSFHSLQKLVISDANLTGTIPSDIGDCSSLTVIDLSSNNLVGSIPASIGKLQNLQNLSLNSNQLTGKIPAELSNCIGLKNLLLFDNQISGTVPPELGKLSQLESLRAGGNKDIVGKIPEELGECSNLTVLGLADTRISGSLPASLGRLSKLQTLSIYTTMLSGEIPPELGNCSELVDLFLYENSLSGSIPSELGKLKKLEQLFLWQNGLVGAIPEEIGNCTSLRKIDFSLNSLSGTIPVSLGGLLELEEFMISDNNVSGSIPASLSNGRNLQQLQVDTNQLSGLIPPELGQLSNLMVFFAWQNQLEGSIPSSLGNCSNLQALDLSRNALTGSIPVGLFQLQNLTKLLLISNDISGFIPNEIGSCSSLIRLRLGNNRITGSIPKTIGNLKRLNFLDLSGNRLSGPVPDEIGSCTELQMIDFSSNNLEGPLPNSLSSLSAVQVLDASSNKFSGPLPASLGRLVSLSKLILSNNLFSGPIPASLSLCSNLLLLDLSSNKLSGSIPAELGRIETLEIALNLSCNSLSGILPAQISALNKLSILDISHNQLEGDLQPLAELDNLVSLNVSYNKFSGCLPDNKLFRQLASKDFTENQGLSCFMKDSGKTGVALNENNVRKSRRLKLAIGLLIALTVIMILMGITAVIKARRTIRDDDSELGDSWPWQFIPFQKLNFSVEQVLRCLIDRNIIGKGCSGVVYKAEMDSGEVIAVKKLWPTTIDEGEAFKEEKSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRRTRLLIFDYMPNGSLSSLLHERTGNSLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHVVDWVRQKKGLEVLDPSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMRDIAAMLKEIKHERRSMQNLMCF 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00899 1080 FunFam LRR receptor-like serine/threonine-protein kinase 541 616 - -
Pumo8g00899 1080 SUPERFAMILY L domain-like 59 405 - -
Pumo8g00899 1080 FunFam Nuclear pore complex protein NUP107 42 197 - -
Pumo8g00899 1080 Gene3D Ribonuclease Inhibitor 239 342 IPR032675 -
Pumo8g00899 1080 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 769 872 - -
Pumo8g00899 1080 Gene3D Ribonuclease Inhibitor 343 440 IPR032675 -
Pumo8g00899 1080 Gene3D Ribonuclease Inhibitor 441 707 IPR032675 -
Pumo8g00899 1080 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 330 1064 - -
Pumo8g00899 1080 ProSiteProfiles Protein kinase domain profile. 786 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00899 1080 MobiDBLite consensus disorder prediction 1 21 - -
Pumo8g00899 1080 ProSitePatterns Protein kinases ATP-binding region signature. 792 815 IPR017441 GO:0005524
Pumo8g00899 1080 Gene3D Phosphorylase Kinase; domain 1 773 872 - -
Pumo8g00899 1080 SUPERFAMILY Protein kinase-like (PK-like) 764 1064 IPR011009 -
Pumo8g00899 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 917 929 IPR008271 GO:0004672|GO:0006468
Pumo8g00899 1080 SMART LRR_typ_2 423 447 IPR003591 -
Pumo8g00899 1080 SMART LRR_typ_2 663 688 IPR003591 -
Pumo8g00899 1080 SMART LRR_typ_2 303 327 IPR003591 -
Pumo8g00899 1080 SMART LRR_typ_2 351 375 IPR003591 -
Pumo8g00899 1080 SMART LRR_typ_2 158 182 IPR003591 -
Pumo8g00899 1080 SMART LRR_typ_2 495 519 IPR003591 -
Pumo8g00899 1080 SMART LRR_typ_2 567 591 IPR003591 -
Pumo8g00899 1080 SMART serkin_6 786 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00899 1080 Gene3D Transferase(Phosphotransferase) domain 1 873 1078 - -
Pumo8g00899 1080 Pfam Protein tyrosine and serine/threonine kinase 790 1063 IPR001245 GO:0004672|GO:0006468
Pumo8g00899 1080 PRINTS Leucine-rich repeat signature 594 607 - -
Pumo8g00899 1080 PRINTS Leucine-rich repeat signature 640 653 - -
Pumo8g00899 1080 Gene3D Ribonuclease Inhibitor 160 232 IPR032675 -
Pumo8g00899 1080 Gene3D Ribonuclease Inhibitor 44 159 IPR032675 -
Pumo8g00899 1080 Pfam Leucine rich repeat N-terminal domain 43 84 IPR013210 -
Pumo8g00899 1080 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
Pumo8g00899 1080 FunFam Putative LRR receptor-like serine/threonine-protein kinase 621 706 - -
Pumo8g00899 1080 ProSiteProfiles Leucine-rich repeat profile. 642 664 IPR001611 GO:0005515
Pumo8g00899 1080 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 218 441 - -
Pumo8g00899 1080 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 873 1079 - -
Pumo8g00899 1080 SUPERFAMILY RNI-like 385 682 - -
Pumo8g00899 1080 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 442 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00899 Pumo-Chr8 34214216 34218072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00899 40 1069 Receptor kinase-like Gene Family AT5G56040 49.474 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo8g00899 PK_Tyr_Ser-Thr 4.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00899 - - gmx:100818541 1930.61