Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00896 ATGAACCACGACGACAAACTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGTTGGTATACCATGCAAGAGGCTGTTAGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCCTTTCTGAGCACCAGACCCCCAAATTCTCAAAGCCAAAGCATTGATCACACCCTCAGTCTCCAGCAGGGGTTTTACAGTAATGCCAAAAAGGGACAAGCATCATCTTCATCTTCCTCACCAACAACATCCAACGAGTCAGTGTCCCCAAAAGCAGCATCATTTGTTGTGAAACCACCTGAGAAAAAGCACCGTCTCCCTTCTGCTTACAACCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCGAACCCTGAGATCCCACATCGAGAAGCTTTCAGCGCTGCAGCGAAAAATTGGGCTAGGTTCATTCCAAATTCACCAACCAGTTCAGTTTCTGCAAGTAAAGTTAATGATGATTGA 525 0.4762 MNHDDKLTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQSQSIDHTLSLQQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVSASKVNDD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00896 174 MobiDBLite consensus disorder prediction 81 113 - -
Pumo8g00896 174 FunFam Protein CRABS CLAW 90 161 - -
Pumo8g00896 174 Pfam YABBY protein 14 157 IPR006780 GO:0007275
Pumo8g00896 174 CDD HMG-box_SF 118 154 - -
Pumo8g00896 174 Gene3D High mobility group box domain 91 161 IPR036910 -
Pumo8g00896 174 MobiDBLite consensus disorder prediction 81 104 - -
Pumo8g00896 174 PANTHER PROTEIN YABBY 6-RELATED 14 164 IPR006780 GO:0007275
Pumo8g00896 174 SUPERFAMILY HMG-box 101 155 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00896 Pumo-Chr8 34145614 34147601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00896 1 169 C2C2-YABBY Transcription Factor Family AT1G69180 63.372 1.14e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pumo8g00896 YABBY 6.9e-57 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00896 K25796 - gmx:100819079 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00896 8 34145614 34147601 Pumo8g00896 8 34145614 34147601 ECH