Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00894 ATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTCATGAGAAGTAGAAAAGCATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGTAGTTAGAAGCATGGAATTTGTGGACTTGGGATTCCCAGACTTGATGCAAAAGTCTTCTTTTCATGGAAGCCAGCCTCTAGAGACATCTAGCTATGAACTAGATAGTAATAATTCTAGTAAAAGAGGGAATTCCTCCACCCATGTCATTGCTTTGGATTCTTCTCTGGGGGAAGAAGAATCTGATTCAAAGCATTTGAGTTCTCTAGTTGAATCCAAGACTCATGATTCTTCACTGATTGATCTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGTTGTGAAAGAAGGGTTCACTTTAACATCTATACATCCAACCACGCATTCGAAGAGAGCTCGCACTTCCAGCTTGCCTGCACATGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACAGCTAAAGTTATTGTAAATGGCATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAGTTCGATGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCAGGACACAATGAACGCCGGAGGAAACCTCAATTTGATTACATGACTGGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACTAAGTATCTGGGGTCTTCATTACAGAACAAACCCCAGTTTCCCTTTCAAGACATATTTCAAAGTGGCATCCTTTTCCCCGGAAAGCATGCTCAAATCTCTCAGACCGGACGCGTCAAACTGGAAGAGGACTCCATTTACAGTTCCCAACTTGCTGCACCTGTCACACTTGATCAGGAACTATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATTCATCGCGCCATGCAGCAGGCAATCCATTAGCCAGTCCCCGAGTCTTCCATGGCATCTGCATACCCGACAGAGACGGCCAAGTTTCCGAAACGCCTCTGAGGATAAGCCCTGCGGATAAATATGCACCAAATGAGTCCTTTCCATGTACTACAACCTCCAAGGAAGTTATCAAGAATAGATCCGCCGCGACATTTTCCAACGCCGGTCATGCTCTTCAAGTCCATCAGGGAGATGATATATGCCAGCCACCGGACCTGTTCGACGTCAAACATCGTCTTTCCTCAGAACATGGAGCCACTGTTGATCTGTTCCAATTGTCCTCACATCTTCAGAGGGTGGAGCAGCAGAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAGGACTATTGTTTCCCAACTGTGTGA 1449 0.4396 MESWSYVPEEKGYLFSDEMDFSLDAFMRSRKALVEWDNKSNFERDGFNSDREVVRSMEFVDLGFPDLMQKSSFHGSQPLETSSYELDSNNSSKRGNSSTHVIALDSSLGEEESDSKHLSSLVESKTHDSSLIDLKLGRLADCKGASSDKVVKEGFTLTSIHPTTHSKRARTSSLPAHAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYLGSSLQNKPQFPFQDIFQSGILFPGKHAQISQTGRVKLEEDSIYSSQLAAPVTLDQELSSCALSLLSDQSQYSSRHAAGNPLASPRVFHGICIPDRDGQVSETPLRISPADKYAPNESFPCTTTSKEVIKNRSAATFSNAGHALQVHQGDDICQPPDLFDVKHRLSSEHGATVDLFQLSSHLQRVEQQRNSVLVKWENEDYCFPTV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00894 482 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Pumo8g00894 482 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Pumo8g00894 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 89 467 IPR044817 GO:0003677
Pumo8g00894 482 FunFam Squamosa promoter-binding-like protein 14 172 242 - -
Pumo8g00894 482 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Pumo8g00894 482 MobiDBLite consensus disorder prediction 75 99 - -
Pumo8g00894 482 Pfam SBP domain 181 254 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00894 Pumo-Chr8 34120810 34126729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00894 95 480 SBP-box Gene Family AT1G69170 38.242 6.43e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo8g00894 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00894 - - gmx:100820149 880.552