Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00892 ATGGGTAGGGGAAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTGACATTTGCAAAGAGGAGGAATGGGTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAACTCTATGAGTTCTGCAGTGGCCCTAGCATGGCCAAGACACTTGAACGATATCACAGATGCAGTTATGGAGCCTTGGAAGTCCACCACCAACCTGAAATAGAGACTCAGAGGCGCTACCAAGAGTACCTGAAGCTAAAATCCAAAGTTGAGGCACTACAGCAAACACAAAGAAACCTCCTTGGGGAACAATTGGAGCACTTAGACATTAAGGAGCTTGAGCAGCTTGAACATCAGCTGGACTCTTCCTTGAAGCAAATCAGGTCTAACAAGACACAACAGATGCTCGATCAACTCTCTGATTTGCATAGAAAGGAAGAGATGCTACTGGAAACTAATAACATCCTGAGGAACAAGTTGGAGGAAATTAATGTAGCCCTTCAACCAGCATGGGAAGCTAGGGAGCAAAATGCTCCCTACAATTGCCACCCTCCCCAATCAGAGGGATATTATGAGACAGCACATTGCAACAGTACATTGAGAATTGGCTATGACTCTTCAGGGTTAAATGAAGCAGGAGGAGCTGCAGGAACCTCAGCTCAAAATGCCAGTGAATTCATGCATGGATGGATGAACTGA 735 0.4585 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPSMAKTLERYHRCSYGALEVHHQPEIETQRRYQEYLKLKSKVEALQQTQRNLLGEQLEHLDIKELEQLEHQLDSSLKQIRSNKTQQMLDQLSDLHRKEEMLLETNNILRNKLEEINVALQPAWEAREQNAPYNCHPPQSEGYYETAHCNSTLRIGYDSSGLNEAGGAAGTSAQNASEFMHGWMN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00892 244 Coils Coil 122 145 - -
Pumo8g00892 244 FunFam MADS-box transcription factor 1 13 94 - -
Pumo8g00892 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo8g00892 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pumo8g00892 244 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Pumo8g00892 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo8g00892 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo8g00892 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo8g00892 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo8g00892 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo8g00892 244 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo8g00892 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Pumo8g00892 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo8g00892 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo8g00892 244 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00892 Pumo-Chr8 34043863 34057571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00892 1 215 MADS-box Gene Family AT5G15800 65.611 3.69e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo8g00892 K-box 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00892 K09264 - gmx:100811049 466.463