Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00891 ATGGGAAGGGGTAGGGTACAGCTGAAGAGGATAGAGAACAAGATCAATCGGCAGGTAACTTTCTCCAAAAGGAGAGGTGGGTTGCTCAAGAAAGCTCATGAGATCTCTGTACTCTGTGATGCTGAGGTAGCTTTGATTGTCTTCTCTCACAAAGGAAAGCTCTTTGAGTATGCTACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAAAGGTATGCTTATGCAGAGAGGCAGCTAGTAGCAAATGATTCTGAGACACAGGGAAACTGGACCATTGAATACACTAGACTCAAGGCAAAGATTGACCTATTGCAGAGAAACCACAGGTGGCACTATATGGGAGAAGATTTGGCTTCAATGAGCCTCAAAGAGCTTCAAAGTTTGGAGCAGCAGTTAGATACTTCTCTCAAAAACATCCGCACAAGGAGGAATGATCTCATGTACGAGTCCATTTCTGAGCTTCAGAAAAAGGAGAAAAGGATACAAGAGCAGAATAACATTCTCGCAAAGAAGATCAAGGAGAAAGAGCAGGATGTAGCACAGCAAGCTGCACAATGGGAGCAGCCAAACTACAGGGTTGATACATCTTTCATACCACAGCAGCAACCCCTTCCCAGTTTGACCATAGGTGGCAATAACTACAACCAGGAAGCTGCACCAGAACTAGGAAGGAACGGCCTTGACCTGACCCTGGAACCACTGTATTCTTGCCACCTTGGATGCTTCTGA 732 0.4549 MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNHRWHYMGEDLASMSLKELQSLEQQLDTSLKNIRTRRNDLMYESISELQKKEKRIQEQNNILAKKIKEKEQDVAQQAAQWEQPNYRVDTSFIPQQQPLPSLTIGGNNYNQEAAPELGRNGLDLTLEPLYSCHLGCF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00891 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo8g00891 243 Coils Coil 152 186 - -
Pumo8g00891 243 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo8g00891 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo8g00891 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Pumo8g00891 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pumo8g00891 243 FunFam Floral homeotic protein APETALA 1 13 68 - -
Pumo8g00891 243 Pfam K-box region 84 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo8g00891 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo8g00891 243 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Pumo8g00891 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo8g00891 243 Coils Coil 123 146 - -
Pumo8g00891 243 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Pumo8g00891 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo8g00891 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo8g00891 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00891 Pumo-Chr8 34027889 34031961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00891 1 243 MADS-box Gene Family AT1G26310 62.016 9.68e-106 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo8g00891 K-box 5.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00891 K09264 - gmx:100819745 451.44