Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00884 ATGAAGATAAGTGATAGCAATTATAGTCTTGCGGCAAAGTTCCAACTGAGAAGGGAACAAAGGAAGAAGAAAGTTCCACATGTCATTATTGTGGCTGGTGCTACTTTAGGTACCATTTTGGGACTGCTCTTAACATTTTTCATTCTTATCCGTAGAGCATGGAAAAAACTGAAGTGGGGAACTTCTCATGTACTCCCATCAAATTCTACTAAAAGTAGTCACAAAAACATTCAACTAAGAGTGACTCCAGGTCATTGCCGTCAATTCACATTAGCAGATATCAGCATAGCCACGAACAACTTCAGTGGAGATCTTGTGATTGGGGAGGGAGGCTTTGGAAAGGTGTACAAAGGAATCATGCATCATGATGAGGTTACTCCTGTGGCAATAAAGCGCTCTAATCCTAGTTCTCGCCAAGGATATAAAGAGTTTCAAAATGAGATCAATCTTTTCTCGTTTTGTCACATGAATTTAGTGTCCATGTTGGGATACTGCCAAGAGGGAAATGAACTTGTACTTGTGTATGAATACATGGCTGAGGGTCCTCTGTGTGATCATTTGTACAAGAAACAAAAACAGCCACTGCCTTGGATTCAAAGACTAAAGATTTGTGTTGGTGCAGCTCGAGGACTACATTACCTCCACACTGGCACAAGCCACCCAGTGATTCACCGTGATGTGAAGTCAGCCAACATTTTATTGGATCAAAATTGGGTAGCCAAGATTGCAGATTTTGGGTTGTGTAGAACAGTTCCATCACATTACCACTCACATGTTAGCACTGAGGTTAAAGGTACTTTAGGATATTTAGACCCTGAGTACTATAAGAGAAGAAAACTGACTGAAAAATCTGATGTGTATTCATTTGGAGTGGTTTTGTTTGAAGTGTTGTGTGGAAGACCAGCTGTGAATCCTGTGGCAGTGGAAGAGGAAAGTGAGAAAGCTGGGTTGGCCACGTGGGCCATGCACTGTTACCAGTGTGGAACCATTGATCAATTAGTTGATCCATATTTAGAAGGGAATATTAGGCTAGAATGCCTGAGGGCATTTGTGGATATAGGCATCCAGTGTTTGGCTGATAGAAGTGCAGATAGGCCAACTATGGGAGAGGTGCTTAATAGTTTGGAGAAGATCCTTTCCTTGCAGGATAGTTTAGAGGAAAATGAAGTTAATACAGCTCAATTTCTACAAGACTAG 1197 0.4135 MKISDSNYSLAAKFQLRREQRKKKVPHVIIVAGATLGTILGLLLTFFILIRRAWKKLKWGTSHVLPSNSTKSSHKNIQLRVTPGHCRQFTLADISIATNNFSGDLVIGEGGFGKVYKGIMHHDEVTPVAIKRSNPSSRQGYKEFQNEINLFSFCHMNLVSMLGYCQEGNELVLVYEYMAEGPLCDHLYKKQKQPLPWIQRLKICVGAARGLHYLHTGTSHPVIHRDVKSANILLDQNWVAKIADFGLCRTVPSHYHSHVSTEVKGTLGYLDPEYYKRRKLTEKSDVYSFGVVLFEVLCGRPAVNPVAVEEESEKAGLATWAMHCYQCGTIDQLVDPYLEGNIRLECLRAFVDIGIQCLADRSADRPTMGEVLNSLEKILSLQDSLEENEVNTAQFLQD 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00884 398 ProSiteProfiles Protein kinase domain profile. 101 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00884 398 FunFam Receptor-like protein kinase FERONIA 178 396 - -
Pumo8g00884 398 Gene3D Transferase(Phosphotransferase) domain 1 178 397 - -
Pumo8g00884 398 PANTHER OS07G0166700 PROTEIN 85 382 IPR045272 GO:0004714|GO:0006468
Pumo8g00884 398 CDD STKc_IRAK 107 378 - -
Pumo8g00884 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Pumo8g00884 398 ProSitePatterns Protein kinases ATP-binding region signature. 107 131 IPR017441 GO:0005524
Pumo8g00884 398 SMART serkin_6 101 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00884 398 FunFam receptor-like protein kinase FERONIA 64 177 - -
Pumo8g00884 398 SUPERFAMILY Protein kinase-like (PK-like) 73 375 IPR011009 -
Pumo8g00884 398 Gene3D Phosphorylase Kinase; domain 1 63 177 - -
Pumo8g00884 398 Pfam Protein tyrosine and serine/threonine kinase 106 374 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00884 Pumo-Chr8 33885415 33886611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00884 16 388 Receptor kinase-like Gene Family AT3G51550 50.255 1.04e-122 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Pumo8g00884 PK_Tyr_Ser-Thr 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00884 - - gmx:100776324 677.937