Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00865 ATGAGAGCAGGGAAAGGGAGCCAGGAAGAGGATGAGTACGAGGAAGAAGATTTTGGTTCTTCCAAGAAACAGGGAACTTCCTCTGCCCTCAACACCAACAAAGATGGAAAAGCCATTGATAAGGCTAGTGCGATCAGATCAAAACATTCTGTGACTGAGCAGCGGAGAAGGAGCAAGATAAATGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACAGGCATCATTTTTATTAGAGGTACATTTTGTAAAGTGAGAAATAATTATATTTTCTTGTTTAAATTGATTGAGAATATATCTAACAACATGTCAATCTGTCATGTTTCTTTGCAGGTGATAGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAGTACGAAGGTTCATATCAAGGTTGGGGTCAAGAGCCCTCGAAGTTGATGCCATGGAGAAATAGTCATTGGCGTGTCCAGAGCTTCGCTGGTCAACCTACATCTGTAAAGAATGGTTTGGGTCCAGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAATGTTAGTGTCTCTCCAACTATGCTTAGTGGCACCCAGAATACAATAGATCCTGATCAGAGCAGGGATATTGTCAACAAGACAGCTGAGAGGCAACCTGATTTAGTAAGCAAGGGAATACCTCTTCCCCTTGCTATGCATGCTAACATGTCTGTTCCTGTCAGAAGTGATGGTGTACTTGCACATCCTCTTCAGGGAACTGTTTCTGATGCACAATCAACTGAATGCCCAACAACTAGTGAATCACAGAACCAGCAGGATGAACTCACGGTTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGTTGTTGAATAATCTAACTCAAGCGCTACAAAGTGCCGGTTTAGATCTGTCACAGGCTAGCATCTCGGTTCAGATTAATCTTGGGAAACGAGCAAACAAAGGACTGAGCTGTGGGACTTCTTCTCCCAAGCATCATGACAACCCTTCTTCAAACAATCAAACAATTGCACATTTTAGAGATGCAGGCAGTGGAGAAGACTCGGATCAAGCACAAAAAAGAATGAAAACATATAAGTGA 1104 0.4221 MRAGKGSQEEDEYEEEDFGSSKKQGTSSALNTNKDGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTGIIFIRGTFCKVRNNYIFLFKLIENISNNMSICHVSLQVIEYVQYLQEKVQKYEGSYQGWGQEPSKLMPWRNSHWRVQSFAGQPTSVKNGLGPVSPFPGKFDESNVSVSPTMLSGTQNTIDPDQSRDIVNKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVLAHPLQGTVSDAQSTECPTTSESQNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANKGLSCGTSSPKHHDNPSSNNQTIAHFRDAGSGEDSDQAQKRMKTYK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00865 367 Gene3D - 42 146 IPR036638 GO:0046983
Pumo8g00865 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 152 IPR036638 GO:0046983
Pumo8g00865 367 CDD bHLH_AtBIM_like 43 151 - -
Pumo8g00865 367 MobiDBLite consensus disorder prediction 252 272 - -
Pumo8g00865 367 Pfam Helix-loop-helix DNA-binding domain 46 77 IPR011598 GO:0046983
Pumo8g00865 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 126 IPR011598 GO:0046983
Pumo8g00865 367 MobiDBLite consensus disorder prediction 350 367 - -
Pumo8g00865 367 SMART finulus 50 132 IPR011598 GO:0046983
Pumo8g00865 367 MobiDBLite consensus disorder prediction 39 57 - -
Pumo8g00865 367 MobiDBLite consensus disorder prediction 323 367 - -
Pumo8g00865 367 MobiDBLite consensus disorder prediction 1 57 - -
Pumo8g00865 367 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 365 IPR044295 GO:0003700|GO:0006351|GO:0046983
Pumo8g00865 367 MobiDBLite consensus disorder prediction 323 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00865 Pumo-Chr8 33368581 33373745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00865 1 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 49.864 6.21e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g00865 HLH 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00865 - - gmx:100816055 613.609