Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00853 ATGGGAAGATCTCCATGTTGTGATGAAATTGGTTTGAAGAAAGGCCCTTGGACACCTGAAGAAGATCAGAAGCTTATTAACCACATTCAAAAATATGGTCATGCAAGCTGGAGAGCTCTTCCAAAACTTGCAGGACTCAACAGGTGCGGCAAAAGTTGCAGGTTAAGGTGGACGAACTACTTGAGGCCTGACATCAAAAGAGGGAAGTTTTCCCAAGAAGAAGAACAAACAATTCTGGATCTCCATGCCATCCTAGGAAACAAATGGTCTGCAATAGCAAGTCATTTACCGGGTCGTACAGATAATGAAATCAAGAATTTTTGGAACACCCATCTGAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACACACCAGCCTCGAATTGATGATATCTTCTCAGGCTTGTCTCATCTCTTAGCACTGGCTAACCTCAAAGAACTCTTGGACCATCATCATCAACCATGGGAACAAAACCTTGCAACAAGGCTTCAAGAAGAGACCATCCAATTGGCCAGGCTCCAATGCTTACAACAACACCTCTTGCAGCCACCACAAGCTTCATTAACTGAGGCAGATCCTAACACAATTAATAGCATAATAAACAGCACCTTCATGAACAAGAACACCTCCATCAATGTTTCAAATGATCAACCTGAGAACAACATTATCATGTCATCTAATGGAATTGGCAGTGTCCAATTCGTTAATGATACTGCGCCTTTCTCTCATATGCCTGAGTTGAAAACACCACCTTCTTGTTCTTCCTATGAAGCTCCATTGAGTAATAATAAGGACATGGTTCAATTTTGTCAAGGAGATCCAAGTTATCCCAATTCCCCATGGCTTCTTTCATGTTCAAGCACTACCCCTTCTTCTCCTTCTTCCCTTGTGGTTCCACCTCTGACTGAGGTTTCATTGACTAATACGGAGGATAATTGCACTATTTGGCCAGAGCTCCTGCTAGAGGACCCTTTGTTCAAAATGATTTCCTAG 999 0.4224 MGRSPCCDEIGLKKGPWTPEEDQKLINHIQKYGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILDLHAILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRIDDIFSGLSHLLALANLKELLDHHHQPWEQNLATRLQEETIQLARLQCLQQHLLQPPQASLTEADPNTINSIINSTFMNKNTSINVSNDQPENNIIMSSNGIGSVQFVNDTAPFSHMPELKTPPSCSSYEAPLSNNKDMVQFCQGDPSYPNSPWLLSCSSTTPSSPSSLVVPPLTEVSLTNTEDNCTIWPELLLEDPLFKMIS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00853 332 FunFam MYB-related transcription factor 13 66 - -
Pumo8g00853 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo8g00853 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo8g00853 332 CDD SANT 69 112 IPR001005 -
Pumo8g00853 332 CDD SANT 16 61 IPR001005 -
Pumo8g00853 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo8g00853 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo8g00853 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Pumo8g00853 332 Gene3D - 69 116 - -
Pumo8g00853 332 FunFam Transcription factor MYB39 69 130 - -
Pumo8g00853 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo8g00853 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo8g00853 332 SMART sant 13 63 IPR001005 -
Pumo8g00853 332 SMART sant 66 114 IPR001005 -
Pumo8g00853 332 Gene3D - 11 67 - -
Pumo8g00853 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00853 Pumo-Chr8 33221635 33223281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00853 1 331 MYB Transcription Factor Family AT5G10280 49.716 5.86e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo8g00853 Myb_DNA-binding 6.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00853 K09422 - gmx:100785374 479.559