Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00844 ATGAGTGACAAAGAAAAGTTTGAGGTGGATAGAAACGAGGATCCTATGAATTATTCTAGTGGTATGCACTCGGATTGGAGATTTGGGGGTGCAAATTCTTCTGTAGGTTTGGTTGGCTTGGGGAATTCTATGAATGTCAGCAGAGGGGATTTGATTGGTTCTTCTACATGTTCCTCTGCTTCAATGGTGGACTCATTTGGTCCAAACTACTGGGATAACCCTACCAGTTCTCAAAACTTGGGATTTTGTGACATTAATGTCCACAACAATGGGGGTTCTTCAACCACTGCTGGAATCAGAAAAGATGGCTTTGGATTTGGAAGAGCTGCTCAGGATCATCATGGAACACTTGAAATGGGTTGGAACCCTGCTAATTCTATGTTACCAAATGGACCAGGGATGTTTCCCCACAGTTTATCTCAGTTCCCAACTGATTCTGGATTCATTGAGAGAGCTGCAAGGTTCTCATGCTTCAGTGGAGGGAATTTTGGTGATATGGTGAACTCATATGGGATTCCTCAATCCATGGGGCTGTATGGAGCAAGAGATGCTATTGCAGGCCATGGTTTGAAATCAGTAACTGCAGGACAATCTCAAGGAGGTGATATGAATGTAGTTGAAGCTACAAAAGATGTGTCTCCATCTGTTGAGCATCTGGCTGCTAAAGGAAGCCCTCTCAAGAGTGATAGAAGAAGTGAAGGCCATGTTATGTCTCAAGATGAAGGGAAGCAATCTCTTGTTAGGCCTGCTAATGAGTCTGATAGAGCTGAATCTAGTGATGGTGGTGGTGGCCAGGATGATTCCCCAATGTTGGAGGGTACTAGTGGGGAACCTTCTAGCAAAGGGCTAAACTCAAAGAAAAGGAAAAGAAGTGGGCAGGATGGTGATAATGATAAAGCCAATGGAGCTCCAGAACAACCTAGTGAAGGTGCAAAGGACAGCTCTGAGAATCAACAGAAGGGAGATCAACAACCAACTTCAACAACCAAGGCTACTGGGAAGAATGCCAAACTGGGGTCTCAAGCTTCTGATCCACCCAAGGAGGAATACATACACGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGCCTTGCTGAGAGAGTAAGGAGGGAAAAGATAAGTGAGAGGATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAGCAAGGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAAGTTGAGTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGACTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCAACAACGGCTTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGATATGCCCATGGCTTTTCCTCCATTACATCCACCTCAACCAGGGCTGATTCATCCAGTAATTACCAACATGGCAAACTCATCTGATATCCTTCAAAGAACCATCCATCCACAGTTAGCTCCCTTGAACGGTGGATTCAAGGAGCCAAATCAGCTGCCTGATGTATGGGAGGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCAACAACTGCTCCCCTGACTAGCCAAGATGTTGATGGTACTGCGCCAGCAAGTCAGATGAAAGTAGAACTTTGA 1641 0.4455 MSDKEKFEVDRNEDPMNYSSGMHSDWRFGGANSSVGLVGLGNSMNVSRGDLIGSSTCSSASMVDSFGPNYWDNPTSSQNLGFCDINVHNNGGSSTTAGIRKDGFGFGRAAQDHHGTLEMGWNPANSMLPNGPGMFPHSLSQFPTDSGFIERAARFSCFSGGNFGDMVNSYGIPQSMGLYGARDAIAGHGLKSVTAGQSQGGDMNVVEATKDVSPSVEHLAAKGSPLKSDRRSEGHVMSQDEGKQSLVRPANESDRAESSDGGGGQDDSPMLEGTSGEPSSKGLNSKKRKRSGQDGDNDKANGAPEQPSEGAKDSSENQQKGDQQPTSTTKATGKNAKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQQRLGPSSALGFPLDMPMAFPPLHPPQPGLIHPVITNMANSSDILQRTIHPQLAPLNGGFKEPNQLPDVWEDELHNVVQMSFATTAPLTSQDVDGTAPASQMKVEL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00844 546 Gene3D - 356 429 IPR036638 GO:0046983
Pumo8g00844 546 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 409 IPR011598 GO:0046983
Pumo8g00844 546 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 244 463 IPR024097 GO:0006355
Pumo8g00844 546 MobiDBLite consensus disorder prediction 210 347 - -
Pumo8g00844 546 MobiDBLite consensus disorder prediction 282 296 - -
Pumo8g00844 546 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 357 428 IPR036638 GO:0046983
Pumo8g00844 546 MobiDBLite consensus disorder prediction 223 238 - -
Pumo8g00844 546 Pfam Helix-loop-helix DNA-binding domain 362 410 IPR011598 GO:0046983
Pumo8g00844 546 MobiDBLite consensus disorder prediction 308 339 - -
Pumo8g00844 546 FunFam Basic helix-loop-helix transcription factor 356 428 - -
Pumo8g00844 546 CDD bHLH_AtBPE_like 349 434 - -
Pumo8g00844 546 MobiDBLite consensus disorder prediction 247 261 - -
Pumo8g00844 546 SMART finulus 365 415 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00844 Pumo-Chr8 32767957 32772662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00844 1 522 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 44.981 3.72e-122 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g00844 HLH 7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00844 - - gmx:100797720 1021.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00844 8 32767957 32772662 Pumo8g00844 8 32767957 32772662 ECH