Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00810 ATGGAGAGAAGAGGGGATGTTGCTCTCTTTTGTTTAGCTTTTTTCTTCCTTTGGACTTCAGTGGCTGGTTTGCTTTCTCCTAAAGGTGTCAACTATGAAGTTCAAGCTCTGATGGGCATTAAAAACTCTCTGGCGGATCCTCATTCTGTCTTAAATAACTGGGATGGTGATGCTGTGGATCCTTGCAACTGGGCTATGGTCACTTGCTCTCCTGATCATTTTGTGATTGCCCTTGGGATTCCAAGCCAAAGTATATCTGGCACTCTCTCACCAAGCATAGGAAACTTAACAAACCTCCAGACTGTGCTTCTGCAGGATAATAATATAACAGGACCAATCCCCTCTGAGATTGGAAGGCTCCAAAAGCTTCAAACTCTTGATCTTTCTGACAATTTCTTCACTGGTCAACTTCCAGATTCTCTTTCACACATGAAGGGTCTCCATTATTTGCGGCTAAACAATAACAGTCTCACTGGACCAATTCCTTCCTCTTTGGCTAACATGACCCAGCTTGCCTTTCTGGATATCTCTTATAATAACTTGAGTGAACCTGTACCAAGAATAAATGCAAAAACATTCAATATTGTAGGCAATCCTCAAATATGTGCCACTGGAGTTGAGAAGAACTGCTTCAGAACAACATCAATTCCTTCTGCTCCAAATAATTCTCAAGATTCACAATCCACCAATAGACCAAAGAGTCACAAATTTGCCCTGGCGTTTGCTTCAAGCTTAAGCTGCATATGCTTACTAATTCTGGGACTTGGCTTCCTCATCTGGTGGAGACAAAGATATAACAAGCAAATATTCTTTGATGTTAATGAACAACATCGTGAAGAGGTTTGCCTTGGAAACCTCAAGAAGTTCCACTTCAGAGAACTTCAGCTTGCTACAAACAACTTCAGCAGCAAGAACTTGATTGGCAAAGGTGGTTTTGGAAATGTCTACAAAGGGTATCTCCAAGATGGTACAGTTATAGCAGTAAAAAGGCTTAAAGATGGAAATGCCATTGGAGGTGAGATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCTGTCCATCGGAATCTTCTTCGCCTGTATGGATTCTGCATGACAGCTACAGAGAGGCTCTTGGTTTATCCCTACATGTCAAATGGCAGTGTTGCTTTCCGTCTAAAAGCCAAACCAGCTTTGGACTGGCCTACAAGGAAGAGAATAGCTTTAGGAGCTGGAAGAGGCTTGCTATATTTGCATGAACAGTGTGACCCAAAGATTATTCACAGGGATGTGAAGGCTGCAAATATCTTGCTTGATGATGATTGTGAGGCTGTGGTGGGAGATTTTGGGTTGGCAAAGCTATTAGACCACAGGGATTCGCATGTGACAACAGCAGTGAGAGGCACTGTGGGGCACATAGCCCCTGAGTATCTCTCTACAGGTCAATCTTCTGAGAAAACAGATGTGTTTGGGTTTGGAATTCTTCTTCTTGAACTGATATCTGGCCAAAGAGCTCTTGAGTTTGGAAAAGCAGCAAACCAGAAAGGAGCCATGCTAGACTGGGTGAGCCAACCAGAATTGGTTCTTTTTATCATTTATTTATTTATTTATTTATTTATGGTTTAA 1608 0.4204 MERRGDVALFCLAFFFLWTSVAGLLSPKGVNYEVQALMGIKNSLADPHSVLNNWDGDAVDPCNWAMVTCSPDHFVIALGIPSQSISGTLSPSIGNLTNLQTVLLQDNNITGPIPSEIGRLQKLQTLDLSDNFFTGQLPDSLSHMKGLHYLRLNNNSLTGPIPSSLANMTQLAFLDISYNNLSEPVPRINAKTFNIVGNPQICATGVEKNCFRTTSIPSAPNNSQDSQSTNRPKSHKFALAFASSLSCICLLILGLGFLIWWRQRYNKQIFFDVNEQHREEVCLGNLKKFHFRELQLATNNFSSKNLIGKGGFGNVYKGYLQDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTATERLLVYPYMSNGSVAFRLKAKPALDWPTRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDDCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAMLDWVSQPELVLFIIYLFIYLFMV 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00810 535 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 212 - -
Pumo8g00810 535 Gene3D Transferase(Phosphotransferase) domain 1 378 522 - -
Pumo8g00810 535 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Pumo8g00810 535 SUPERFAMILY Protein kinase-like (PK-like) 281 505 IPR011009 -
Pumo8g00810 535 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Pumo8g00810 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Pumo8g00810 535 SMART serkin_6 301 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00810 535 FunFam Somatic embryogenesis receptor-like kinase 1 378 521 - -
Pumo8g00810 535 ProSiteProfiles Protein kinase domain profile. 301 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00810 535 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Pumo8g00810 535 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Pumo8g00810 535 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Pumo8g00810 535 SUPERFAMILY L domain-like 32 304 - -
Pumo8g00810 535 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 508 - -
Pumo8g00810 535 Pfam Protein kinase domain 302 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00810 535 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00810 Pumo-Chr8 31518102 31523450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00810 8 518 Receptor kinase-like Gene Family AT5G16000 72.674 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pumo8g00810 Pkinase 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00810 - - gmx:100804283 979.548