Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00788 ATGCTCACCAAGTACCTAACTCTAATTTACACTCATCTCAAATGGGTACTAGATTTTCTTCTCTACTACCCCTTTTACATGCTCCATGATTCTCAACCACCCATAAACCTTGTTACTGAATTGAGTACATTCCACTATGAATTCACCTCTGGCTCAGAGGAACATGTGGATTGTGCTGTGTGTCTCAACAAAATTGGAGAAGGAGATGAGGTTACGAGAGTGATGAGATGTGGGCATGTCTTCCACAAAGGTTGTTTGGAAAGATGGGTTGGTTTCAAGAACGCCACGTGTCCTCTTTGCAGAGGATCAGTGGCTCCAACATGGCCTATCACTGATTCTGGAGCTGAGGTTTTGTTTTTTCAGTTTTGTTCTGTCCAAAAGCATGATGACCCTGAGACATGGTGGCTACGTTGA 414 0.4348 MLTKYLTLIYTHLKWVLDFLLYYPFYMLHDSQPPINLVTELSTFHYEFTSGSEEHVDCAVCLNKIGEGDEVTRVMRCGHVFHKGCLERWVGFKNATCPLCRGSVAPTWPITDSGAEVLFFQFCSVQKHDDPETWWLR 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00788 137 SMART ring_2 58 100 IPR001841 -
Pumo8g00788 137 SMART ringv_2 57 101 IPR011016 GO:0008270
Pumo8g00788 137 ProSiteProfiles Zinc finger RING-type profile. 58 101 IPR001841 -
Pumo8g00788 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 107 IPR013083 -
Pumo8g00788 137 Pfam Ring finger domain 57 101 IPR001841 -
Pumo8g00788 137 SUPERFAMILY RING/U-box 57 111 - -
Pumo8g00788 137 PANTHER RING ZINC FINGER PROTEIN-RELATED 34 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00788 Pumo-Chr8 30952523 30952936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00788 44 117 C3H Transcription Factor Family AT1G15100 43.243 1.60e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00788 - K16282 sind:105156745 124.405