Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00785 ATGAGCCCTCTAATCAGACTTGCCTTAGCAATTAACTCTATTTCCACTTCCCATACCTTCAGAATGCTCATGAAGTTCTTAACTCTCCCTCACACCCTTCTTAAACAGACATTACATTTCATTTTCCACTACTTCTACTATCCCTTATCATGCACCCTCTTTGGAGAAAAGCTCGGCACGTGCCGTCACGTGACCACCTATGTGTCACGGGAAGATGTGGAAGATTGTGCCGTGTGCCTCTGCAAAATGGGAGAAAGAGAAGAGATCATAACGCTGCGGTGTGGACATGTCTTCCACAGAGATTGCTTGGACACTTGGGTTGGTTTCATCAATGCTACTTGCCCTCTATGCAGAGACTCAGTCGGTCCAAAAATAAGGAATAATATTGGAGAGTTGGTTTGTGCTGAAATTGTGCTGTTTGAGTCTTGCTCTATCAACACTGATGAATGTGAGATAAAGTGGTTGCGATGA 471 0.4416 MSPLIRLALAINSISTSHTFRMLMKFLTLPHTLLKQTLHFIFHYFYYPLSCTLFGEKLGTCRHVTTYVSREDVEDCAVCLCKMGEREEIITLRCGHVFHRDCLDTWVGFINATCPLCRDSVGPKIRNNIGELVCAEIVLFESCSINTDECEIKWLR 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00785 156 PANTHER RING ZINC FINGER PROTEIN-RELATED 70 121 - -
Pumo8g00785 156 SMART ring_2 76 117 IPR001841 -
Pumo8g00785 156 SUPERFAMILY RING/U-box 71 124 - -
Pumo8g00785 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 125 IPR013083 -
Pumo8g00785 156 ProSiteProfiles Zinc finger RING-type profile. 76 118 IPR001841 -
Pumo8g00785 156 CDD RING-H2 76 118 - -
Pumo8g00785 156 Pfam Ring finger domain 75 118 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00785 Pumo-Chr8 30910364 30910974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00785 74 121 C3H Transcription Factor Family AT1G15100 52.083 2.88e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00785 K16282 - vvi:104878972 97.4413