Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00784 ATGTTCATGAAATACATAGCTCTATTTTACACTCATCTCAAATGGGTGTTAGATTTCCTTCTCTATTATCCCTTCTACAAGGTCCATGATTCTCAAATCCCAATAATTGGTGAAGACCAAAGCATATGCCACTATGCACCCACCCCTGGCTCAGAGGAAGAAGATGTTGATTGTGCAGTTTGTCTATGCAAAATTGGAGATGGTGAAGAGATTAGAGAGCTTAGGTGTGAACATTTCTTTCACAGAAATTGCTTGGATACATGGGTTGCTCTCAAAAATGCCACTTGCCCTCTTTGCAGAGAACCAGTGAGACCAAGAAGGGCCATCAATGAGGTTGGAGCTGAGGTTCTATTGTTTTGA 360 0.4139 MFMKYIALFYTHLKWVLDFLLYYPFYKVHDSQIPIIGEDQSICHYAPTPGSEEEDVDCAVCLCKIGDGEEIRELRCEHFFHRNCLDTWVALKNATCPLCREPVRPRRAINEVGAEVLLF 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00784 119 ProSiteProfiles Zinc finger RING-type profile. 58 100 IPR001841 -
Pumo8g00784 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 114 IPR013083 -
Pumo8g00784 119 SMART ringv_2 57 100 IPR011016 GO:0008270
Pumo8g00784 119 Pfam Ring finger domain 57 100 IPR001841 -
Pumo8g00784 119 SMART ring_2 58 99 IPR001841 -
Pumo8g00784 119 PANTHER - 33 110 - -
Pumo8g00784 119 SUPERFAMILY RING/U-box 41 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00784 Pumo-Chr8 30900849 30901250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00784 54 103 C3H Transcription Factor Family AT1G80400 52.000 2.75e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00784 K16282 - vvi:104878959 122.479