Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00781 ATGGAGAAAGATCACAACTATTCGGCACCACCACCATCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGACCAACACCACCAGCACCAACACCATCATCATCTGTATCCACCAAATCAACAACACCACCTCATGAAGTTCCACACTTCTGGTGATGAAAACAACAATGGATCAATGGTGGATTACTTGCCTCAAGCACCACCACCACCACCCCCACATGGTTTTTATGGTGCTACTAGTGCTGGCACAACATCCTATGACAAGCTGAGCTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCAAAGCTGGCTTTGAACCAAGGAAAAAGCTGTGAAGAATCCGGAATAGACCCGGTTTACTTTCTCAAGTTTCCTGTTTTGAACGACAAGATGGAGGAGGATCAGCAGAACATGATGGTGAATGATGGTGACCCTGATGGTGAAGCAGAAAACCATCATCATCGTGATGAGAGGTTCAACAACTTGGTGAGTGTGGATCAGGACAGGTCAAGGGTTGGTGGTGAAGAGGGAATGATGATGATGAGGGAAGATGAAGAGACAACTCGGGTTTCCGACGACAACAACTCGGTGCAGATTCGGTTTCTTGGTCATGAAGAGCCTCAGAAGAATGCAGTGCAGGAGAACAAGAACACCAAGAGGAAGAGACCAAGGACTGTTAAGACAAGTGAAGAGGTTGAGAGCCAGCGCATGACTCACATAGCAGTTGAAAGGAACCGCAGGAAGCAGATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTACAAAGGGGTGATCAAGCTTCGATAATTGGGGGGGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAGTCACAAAAGAGGAGGAGGCTACTTGGGGAAGCTCAAGCAAGACAAGTTGGGGATCCATCTCTTTCTGCACAACAACAGCCTCCATTCTTTCCACCTTTGCCTATTCCAAATGAGCAGATGAAGCTTGTGGAGATGGAGACCGGACTCCGCGAAGAAACCGCTGAGAGTAAGTCTTGTTTGGCTGATGTTGAAGTGAAGCTTCTTGGATCTGATGCCATGATCAAAATCCTGTCAAGGAGGAGGCCAGGACAGTTGATCAAGACCATTGCTGCACTTGAAGATCTGCAACTTATCATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGCTCCGTCCAGCAGATATTCAATTTTATTCATGCAAACACTAGCATGTGA 1332 0.4647 MEKDHNYSAPPPSMPPSFNTLDYSLDQHHQHQHHHHLYPPNQQHHLMKFHTSGDENNNGSMVDYLPQAPPPPPPHGFYGATSAGTTSYDKLSFADVMQFADFGPKLALNQGKSCEESGIDPVYFLKFPVLNDKMEEDQQNMMVNDGDPDGEAENHHHRDERFNNLVSVDQDRSRVGGEEGMMMMREDEETTRVSDDNNSVQIRFLGHEEPQKNAVQENKNTKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDPSLSAQQQPPFFPPLPIPNEQMKLVEMETGLREETAESKSCLADVEVKLLGSDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00781 443 Gene3D - 228 303 IPR036638 GO:0046983
Pumo8g00781 443 FunFam Basic helix-loop-helix transcription factor 228 303 - -
Pumo8g00781 443 MobiDBLite consensus disorder prediction 1 36 - -
Pumo8g00781 443 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 288 IPR011598 GO:0046983
Pumo8g00781 443 Pfam Helix-loop-helix DNA-binding domain 238 289 IPR011598 GO:0046983
Pumo8g00781 443 SMART finulus 243 294 IPR011598 GO:0046983
Pumo8g00781 443 PANTHER TRANSCRIPTION FACTOR FAMA 157 434 IPR044283 GO:0003700|GO:0010052
Pumo8g00781 443 MobiDBLite consensus disorder prediction 210 239 - -
Pumo8g00781 443 MobiDBLite consensus disorder prediction 207 239 - -
Pumo8g00781 443 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 303 IPR036638 GO:0046983
Pumo8g00781 443 CDD bHLH_AtFAMA_like 240 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00781 Pumo-Chr8 30841031 30844626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00781 51 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 58.654 7.66e-148 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g00781 HLH 9.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00781 K26213 - gmx:100813515 717.998