Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00779 ATGTCGGCAGCGTCGCCGTCTCCGGCTACTTCCACGGCTGCGCCACCGCCACAAACACCACCATCTTCCAACAACACTAGTCCTTCGCCGTCCACTGCCACCACCCCACCGCCGCAACAAACCCCTTCTTCCACTTCCCCGCCGCAACAACCAGCTTCTCCGCCGCCAACAACCCCACCTCCGGCGGCTCCGCCGCCGTCTACTCCGTCTCCGCCACCTAGCTCTCCGCCTCCCCGCATGTCTGGAACACCCCCTCCATTAGCACCTCCACCATCACCACCATCTTCACCGCCGCCGTCTGCTCCGGCGGCGCCGCCACCGGTACCATCGAGCTCTCCACCACCACCACCACCATCAGCACCAGTTCCATCAAGCCCTCCACCATCGCCACCACCATCAAACCCTCCTAACAACACATCTCCACCACCATCACCACCACCACAGCCACCAGCTCCACCACCACAACCACCAGCTCCACCACCTAACAACACTTCAACACCACCACCACGAAATTCGCCACCTCCTCCGGCCACCACGCCGCCACCGGCCTCGCCACCGCAAAATTCACCATCCCCTCCTGCTGTGCCGCCTCCTCGAAACTCCACTAGGTCACCGCCACCGGTTAATTCACCACCACCACCACCGGTGGATGCACCGCCGCCGAGGTCATCATCGCCACCAGCACCAGCACCATCCACCCCTCCTTCTAGGACTAGTCCTCCTCCCACACCAAGTTCTCAACCAGCTCCACCTTCAAATTCTACACCAAGGTCATCACCTCCATCACCACCTTCAATTCCTAATTTGGCCCCACCACCACCATCGCGAGTTTTATCGTCACCGCCGCCACTGCCTCAGAATGGGACAGAAAACTCAAGCCCTGATGGAGGTGGAGATGGAATTGGCACTGTTGGTGTAGTGGCTATTAGTGTGGTGGCTGGATTTCTGCTGCTTGGCTTCATTGGTGTTCTTATATGGTGCATGAGGAGGCAAAAGAGAAAGGTGCCTGTGAGTGGTGGTTATGTCATGCCATCCACTCTTGCATCATCTCCTGAATCAGATTCATCCTTTTTTAAGGCACACTCCTCAGCTCCTCTTGTACAAAGTGGCTCTGGCAGTGATGTTGTGTACACACCATCTGACCCTGGTGGACTAGGCCACTCAAGGTCATGGTTTTCATATGAAGAACTGATCAAGGCCACAAATGGTTTCTCAACTCAAAATCTTTTGGGTGAGGGTGGGTTTGGTTGTGTGTATAAAGGGTGCCTTCCTGATGGGAGAGAGATAGCAGTCAAACAGCTGAAGATTGGTGGAGGTCAGGGAGAGAGAGAATTCAAGGCTGAAGTGGAAATTATCGGTCGCATACATCATCGCCATTTGGTTTCTTTGGTGGGATACTGCATTGAAGACAACAGAAGACTACTTGTCTATGACTATGTCCCAAACAATAACCTTTATTTTCATCTGCATGGGGAAGGTCAGCCTGTGCTAGAATGGGCAAACCGTGTTAAAATTGCAGCTGGTGCAGCCCGAGGACTAGCTTATCTCCATGAAGACTGCAATCCTCGGATCATTCACAGGGATATCAAGTCATCAAACATTCTTTTAGATTACAATTATGAAACTAAGGTCTCAGATTTTGGTCTGGCCAAAATAGCCCTTGATGCAAATACACATATAACCACACGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCTTCAAGTGGCAAATTGACTGAGAAGTCTGATGTATATTCTTTTGGAGTCGTGCTTTTGGAGCTCATTACCGGACGGAAGCCAGTAGATGCATCCCAACCTTTGGGAGATGAGAGCCTAGTTGAATGGGCTCGACCTTTACTGAGTCATGCGATCGATACTGAGGAATTCGACAGTTTGGCAGATGCAAGGCTAGAAAAGAATTATGTTGAGAGTGAATTGTATTGCATGATTGAAATTGCTGCTGCTTGTGTGCGGCATTCAGCTGCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGGTTCTGATCTAACTAATGGAATGCGACTTGGGGAAAGCGAGGTGTTTGACTCTGCACAGCAATCTGAAGAAATAAGATTATTTCGGAGGATGGCATTTGGTAGTCAAAATTATAGCACAGATTTCTTTAGCCATGCTAGTTTGAATCCATGA 2196 0.5118 MSAASPSPATSTAAPPPQTPPSSNNTSPSPSTATTPPPQQTPSSTSPPQQPASPPPTTPPPAAPPPSTPSPPPSSPPPRMSGTPPPLAPPPSPPSSPPPSAPAAPPPVPSSSPPPPPPSAPVPSSPPPSPPPSNPPNNTSPPPSPPPQPPAPPPQPPAPPPNNTSTPPPRNSPPPPATTPPPASPPQNSPSPPAVPPPRNSTRSPPPVNSPPPPPVDAPPPRSSSPPAPAPSTPPSRTSPPPTPSSQPAPPSNSTPRSSPPSPPSIPNLAPPPPSRVLSSPPPLPQNGTENSSPDGGGDGIGTVGVVAISVVAGFLLLGFIGVLIWCMRRQKRKVPVSGGYVMPSTLASSPESDSSFFKAHSSAPLVQSGSGSDVVYTPSDPGGLGHSRSWFSYEELIKATNGFSTQNLLGEGGFGCVYKGCLPDGREIAVKQLKIGGGQGEREFKAEVEIIGRIHHRHLVSLVGYCIEDNRRLLVYDYVPNNNLYFHLHGEGQPVLEWANRVKIAAGAARGLAYLHEDCNPRIIHRDIKSSNILLDYNYETKVSDFGLAKIALDANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLSHAIDTEEFDSLADARLEKNYVESELYCMIEIAAACVRHSAAKRPRMGQVVRAFDSLGGSDLTNGMRLGESEVFDSAQQSEEIRLFRRMAFGSQNYSTDFFSHASLNP 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00779 731 Pfam Protein kinase domain 405 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00779 731 CDD STKc_IRAK 410 680 - -
Pumo8g00779 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Pumo8g00779 731 MobiDBLite consensus disorder prediction 31 281 - -
Pumo8g00779 731 FunFam proline-rich receptor-like protein kinase PERK8 480 691 - -
Pumo8g00779 731 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00779 731 Gene3D Phosphorylase Kinase; domain 1 384 479 - -
Pumo8g00779 731 ProSitePatterns Protein kinases ATP-binding region signature. 410 432 IPR017441 GO:0005524
Pumo8g00779 731 FunFam Proline-rich receptor-like protein kinase PERK8 377 479 - -
Pumo8g00779 731 MobiDBLite consensus disorder prediction 1 298 - -
Pumo8g00779 731 SUPERFAMILY Protein kinase-like (PK-like) 386 675 IPR011009 -
Pumo8g00779 731 MobiDBLite consensus disorder prediction 282 296 - -
Pumo8g00779 731 Gene3D Transferase(Phosphotransferase) domain 1 480 688 - -
Pumo8g00779 731 MobiDBLite consensus disorder prediction 10 24 - -
Pumo8g00779 731 SMART serkin_6 404 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00779 731 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 315 712 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00779 Pumo-Chr8 30786179 30791862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00779 210 673 Trihelix Transcription Factor Family AT1G68690 63.889 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pumo8g00779 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00779 - - gmx:100794393 862.833