Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00717 ATGGCTGGAACATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAATGTGCATCAGGAGCTTGTGATCCTGGAAAGGTTATATGGGAAAGCAATCCTACCAAGGCTTGCCCAAATTGTCAACATGCTATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGGTTAGGAGATTCAAAACCTCATCCTTTCATTGATGAATTTATTATTACTCTTGAAGTGGATGATGGAATTTGCTATACTCATCCTCAAAATTTACCTGGTGTTAAGCAAGATGGAAGTGCTTCCCACTTCTTTCATAGAGCAATCAAGGCTTACAACACCGGCACCCGAAAGCGCCGAAAAATACTAGGTCAAGATTTTGGTGATGTTCGCTGGCACAAGACTGGAAGGACTAAACCAGTTACCTTAAATGGGGTTCAAAAGGGCTGTAAAAAGATTATGGTTCTGTATGTGAGCAATGTAAGAGGAGGAAGAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACAGAAGAGAATGAAAAGGATGGGGAGTACATTATCTCTAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTGGGTGATAAGGATGACCAAGATGTTCCTGAAGCCACTGAAACCACTGAATCAACAATTGTGAAAGTGGATCCAGTCACTCCCAAATTGGTGACTCCTGAACCACCTTGTAATGAAAGGCGGTGTCCAGATCTAGACTTGGGACAAGAAACACATAACATTCCTCAGCCTCCTCAGATGGATTGTTTAGATGAAATTCAAGCTGAATGCCAAGACCTTGCAAATGAATCATCCATGGTAGAAACTCAACATAATGAAGGGATGGATGATAAAGAAAATAATGCTGAGGAAGGCCAAAAATGGTGGGACAGCGAGTCACAGAATCTGTTGGATTCACAACAACTGGTCGAGGCACTGTCGCTGTGTGATGATCTATTCAATAGCCAGTCTCCCAGTAGAGATGGAAATCATGAAGATGATAAGAACCAACCCGGTCTTTCTGTTTATGCTCAGCTAGGACCGGAAGCATCTGAAGAAGGATATTGA 1149 0.4186 MAGTSWLVDKSRIATKIKCASGACDPGKVIWESNPTKACPNCQHAIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGLGDSKPHPFIDEFIITLEVDDGICYTHPQNLPGVKQDGSASHFFHRAIKAYNTGTRKRRKILGQDFGDVRWHKTGRTKPVTLNGVQKGCKKIMVLYVSNVRGGRAEKTNWVMHQYHLGTEENEKDGEYIISKVFYQQQQVKLGDKDDQDVPEATETTESTIVKVDPVTPKLVTPEPPCNERRCPDLDLGQETHNIPQPPQMDCLDEIQAECQDLANESSMVETQHNEGMDDKENNAEEGQKWWDSESQNLLDSQQLVEALSLCDDLFNSQSPSRDGNHEDDKNQPGLSVYAQLGPEASEEGY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00717 382 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Pumo8g00717 382 Coils Coil 284 304 - -
Pumo8g00717 382 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 363 IPR044799 GO:0003700
Pumo8g00717 382 MobiDBLite consensus disorder prediction 298 327 - -
Pumo8g00717 382 MobiDBLite consensus disorder prediction 346 382 - -
Pumo8g00717 382 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Pumo8g00717 382 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Pumo8g00717 382 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Pumo8g00717 382 MobiDBLite consensus disorder prediction 304 320 - -
Pumo8g00717 382 FunFam NAC domain-containing protein 8 67 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00717 Pumo-Chr8 27261571 27267033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00717 14 223 NAC Transcription Factor Family AT1G28470 52.055 1.29e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo8g00717 NAM 2.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00717 - - gmx:100799488 736.873