Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00712 ATGCTGCGGAAGCACACGTACAATGACGAGCTGGAGCAGAGCAAGCGCAGCCGCGGCTTGGTTGGCCGGCGGCGCGGCGGAGCCGCCGCCGCCGGAACCGGAGCGTCACTCTCCGGCGCGTGTGTTACGAAAGCGCGTGAACAATTGTTTGAGAAGGCCGTTACGCCGAGCGACGTGGGAAAATTGAACCGTTTGGTGATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTACAGAGCGTTAACGGCGTTAGCGCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAACAGTAGCCAGAGTTACGTTCTAACCAAAGGTTGGAGCCGGTTCGTTAAGGAGAAGAATCTGAAAGCCGGTGACACGGTTTGTTTTCACCGGTCCACTGGACCGGACAAGCAGCTTTACATCGATTGGAAGACGAGGAATGTTAACGAGGTTGGGCTGTTCGGACCGGTCGGACCGGTGGTTGAACCGATCCAGATGGTTCGGCTCTTCGGGGTTAACATTTTGAAATTGCCCGGTTCGGACTCTATTGTTGCCAATAACAGTAATGCAAGTGGGTGCTGCAATGGCAAGAGAAGAGAAATGGAACTGTTCTCGTTAGAGTGTAGCAAGAAACCTAAGATTATTGGTGCTTTGTAA 690 0.5391 MLRKHTYNDELEQSKRSRGLVGRRRGGAAAAGTGASLSGACVTKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVSATAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKTRNVNEVGLFGPVGPVVEPIQMVRLFGVNILKLPGSDSIVANNSNASGCCNGKRREMELFSLECSKKPKIIGAL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00712 229 Pfam B3 DNA binding domain 50 155 IPR003340 GO:0003677
Pumo8g00712 229 SMART B3_2 50 158 IPR003340 GO:0003677
Pumo8g00712 229 ProSiteProfiles B3 DNA-binding domain profile. 50 158 IPR003340 GO:0003677
Pumo8g00712 229 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 197 IPR044800 GO:0003700
Pumo8g00712 229 MobiDBLite consensus disorder prediction 1 34 - -
Pumo8g00712 229 SUPERFAMILY DNA-binding pseudobarrel domain 48 155 IPR015300 -
Pumo8g00712 229 CDD B3_DNA 49 143 IPR003340 GO:0003677
Pumo8g00712 229 MobiDBLite consensus disorder prediction 1 19 - -
Pumo8g00712 229 Gene3D - 38 167 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00712 Pumo-Chr8 27133153 27133842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00712 1 229 B3 DNA Binding Superfamily AT1G25560 58.547 9.38e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo8g00712 B3 1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00712 K09287 - gmx:100801107 412.149