Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00660 ATGCCCAGCACAGAGTACTCATTTCAGTTCAGTTGCCTCGCGCAACGATGCGACTGCAAGACAAGGACTGAGTTGAAGTTGGGTCAGAAGAAATGCATAATAAGGGTAAAGGTAACACTTCTTAGTTGCAATCAGAAAATCCTCAGATCCATGACTTCCACTGCAATCCATTTCTTTAAGATTATCCTCACTACAACTCTTGCAGATGAAAAACTTAAGCTCCCAAAAACATTCACCAGAAAATATGGAGATAGAATGTCAAACCCGGTGTTTCTCAAGCAGCCAGATGGCACTGAATGGAAAATATGTTGGACCAAGCATGATGGTGAGATTTGGTTTCAAAAGGGTTGGAAGGAGTTTGCCACTTACTATTCTCTAGATCATGGTCACTTGCTGTTCTTTGAATATGAGGGAACTTCTCATTTTGATGTACTCATATTTGACAATAGTTCCCTTGAAATAGACTATCCTTCCCATGGTACTCATGAGGGAAAGGACAACCTTGTGCAGATCAGTGATGACTCTGTTGAAATCTTGGATGAGCAATGTCATGATGGAAAGGACAACCTTGTGCAGATTGGTGATGATTCTATTGAAATCATGAATGAGCAATGTCATGATGGCAAGCATAACCTTGTGCAGATTACTGATGATTCTGTTGAAATTTTGGATGAACAATGTCATGATGGAAAGGACAACAATGTGCAGATTAATGATGATTCTGTTGAAATTTTGGATCAGCAATTTTCATGTAAAAATACTAGAAAGAAATCCACGGTGTCATCTCCTCAACCTTGTAAGAAAATGAAAAATAGCATAACTACAAATGTTGAAAGAAGCTCCAATGGGGAAAACTTGCATCAGCATGACCAAACTAGAAGTAGTAGCTCTCAAGAGGCAACATTTATGAAGCAAAAATTAGATGAAGATGAGGGTATAGGCATTTTTAACACTCAATGCCCACAAGTGGAGCAGTTAACTTCTACCCCTTTAAACAAATCCACAACTTTCAGTTCTGAACATCCCTCCTTCACACTTATCATGAAGCCATCCTTTATTAATGAAGATGACCTGGAAATACCGCCACATTTTGCAGAAAAATATTTGAAGAAATTACATGCACTTGTCACCTTTGAGGTCTTGGATGGGAGGACTTGGCCAGTTATTTATTCTGCTCCTAAAGTTATTGGGGGATGGCAGAAATTTGCATCTGAAAATAATTTGAATGTGGGGGATGTTTGTGTGTTTGAGATGATCCAGAAAATCCAGCGCCTTGCTTTCAAAGTTTCCATCTTTCAAGGTGCAGAGGAACCAAGTAGCCACATTTCACAAGGTGGGAAATCAAGTCGAAGAACTTCAAGCAGGGCTCTTAAAGAAGGCAGCAAATTCAGAACAGAAAATCCCATTTTCATGGTAACTTTAAAATTGCAGGGAAATTCAACCAGATGCCCGCATGTGCCGCGTTACTTTGTCGGAAAGTATTTTGTAAACATGAACAAGAATGTGATCATGATACAGTTTAGAAAGAAATTGTGGCCTGTAACACTTGTATTGAAAGGATACAACAGAGACTACTATCTTTCAGGCGCGCTCTCTGCGGGTTGGCGCTTATTTTCAAGAGAAAATAAACTGCAAAAAGGAGATGTTTGTATCTTTGAGCTCGTCAACAGAGAAAATGCAACACTTGATCTTCATGTTTTCAGAGGTAACAGTGTAATGCATTAG 1725 0.3925 MPSTEYSFQFSCLAQRCDCKTRTELKLGQKKCIIRVKVTLLSCNQKILRSMTSTAIHFFKIILTTTLADEKLKLPKTFTRKYGDRMSNPVFLKQPDGTEWKICWTKHDGEIWFQKGWKEFATYYSLDHGHLLFFEYEGTSHFDVLIFDNSSLEIDYPSHGTHEGKDNLVQISDDSVEILDEQCHDGKDNLVQIGDDSIEIMNEQCHDGKHNLVQITDDSVEILDEQCHDGKDNNVQINDDSVEILDQQFSCKNTRKKSTVSSPQPCKKMKNSITTNVERSSNGENLHQHDQTRSSSSQEATFMKQKLDEDEGIGIFNTQCPQVEQLTSTPLNKSTTFSSEHPSFTLIMKPSFINEDDLEIPPHFAEKYLKKLHALVTFEVLDGRTWPVIYSAPKVIGGWQKFASENNLNVGDVCVFEMIQKIQRLAFKVSIFQGAEEPSSHISQGGKSSRRTSSRALKEGSKFRTENPIFMVTLKLQGNSTRCPHVPRYFVGKYFVNMNKNVIMIQFRKKLWPVTLVLKGYNRDYYLSGALSAGWRLFSRENKLQKGDVCIFELVNRENATLDLHVFRGNSVMH 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00660 574 SUPERFAMILY DNA-binding pseudobarrel domain 52 150 IPR015300 -
Pumo8g00660 574 SUPERFAMILY DNA-binding pseudobarrel domain 464 569 IPR015300 -
Pumo8g00660 574 CDD B3_DNA 57 148 IPR003340 GO:0003677
Pumo8g00660 574 MobiDBLite consensus disorder prediction 256 303 - -
Pumo8g00660 574 SUPERFAMILY DNA-binding pseudobarrel domain 337 432 IPR015300 -
Pumo8g00660 574 ProSiteProfiles B3 DNA-binding domain profile. 57 150 IPR003340 GO:0003677
Pumo8g00660 574 Pfam B3 DNA binding domain 479 569 IPR003340 GO:0003677
Pumo8g00660 574 Pfam B3 DNA binding domain 59 149 IPR003340 GO:0003677
Pumo8g00660 574 Pfam B3 DNA binding domain 345 433 IPR003340 GO:0003677
Pumo8g00660 574 ProSiteProfiles B3 DNA-binding domain profile. 343 435 IPR003340 GO:0003677
Pumo8g00660 574 MobiDBLite consensus disorder prediction 438 458 - -
Pumo8g00660 574 Gene3D - 50 151 IPR015300 -
Pumo8g00660 574 SMART B3_2 344 435 IPR003340 GO:0003677
Pumo8g00660 574 SMART B3_2 471 570 IPR003340 GO:0003677
Pumo8g00660 574 SMART B3_2 58 150 IPR003340 GO:0003677
Pumo8g00660 574 Gene3D - 324 436 IPR015300 -
Pumo8g00660 574 Gene3D - 449 571 IPR015300 -
Pumo8g00660 574 ProSiteProfiles B3 DNA-binding domain profile. 469 570 IPR003340 GO:0003677
Pumo8g00660 574 CDD B3_DNA 342 432 IPR003340 GO:0003677
Pumo8g00660 574 CDD B3_DNA 468 568 IPR003340 GO:0003677
Pumo8g00660 574 PANTHER B3 DOMAIN-CONTAINING 336 558 - -
Pumo8g00660 574 MobiDBLite consensus disorder prediction 256 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00660 Pumo-Chr8 24347039 24350202 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00660 455 573 B3 DNA Binding Superfamily AT3G18990 31.667 4.49e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo8g00660 B3 6.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00660 - - ccaj:109791753 647.891