Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00657 ATGACTTCTGCACGCAATAAGCATCCCTTGCCCACCGCAGTTCATTTCTTTAAGATTATCCCAAGAACAAGTCTTGAACATGGATTAGGATTACTTCTCCCAAAAGATTTCACTAGAAAATATGGAGATGGAATGTCAAACCCGGTGTTTCTCAAGCCTCCAGATGGCACTGAATGGAAAGCATATTGGACCAAGCATGATGCTGACATTTGGTTTCAAAAGGGTTGGAAAGAGTTTGCCACATACTATTCTCTAGATCATGGGCACTTGCTGTTCTTTGAATATGAGGGAACTTCTCATTTTGATGTGCACATATTTGATCACAGTGCCGTTGAAATAGACTATCCATCCCATGGCACTCATGAAGGAGAGGACAACCTTGTGGAGAGTAGTGACGATTCTATTGAAATTTTGGGTGAGCAATTTTCTTGCCAAAAGACTAGAGTGAAATCCACGGTGTCATCTCCTCAACCTTCCAAGGAAATGGAAGCTGGCCTAACTACAAATATTGAAAAAAGCCCCAATAGGGTAAACTTGCATCAGCATGTCCAAACTAGAAGTACTAGCTCTCAAAAGGCAAAATTTATGAAGCAAGAAGTAGATGAAGATGAGGGTAAAGGCATTTTTAACACTGAATGCCCAAAAGGGGAGCAGTTAACTTCTACTGCTTTAAACAAAGCGACAGCTTTCAGATCTGAACATCCCTCTTTCAGGCTTATCATGAAGCCATCCTTTATAAATGGATACAACCTGGAAATACCGCAGCATTTTGCAGAAAAATATTTGAAGAAAACACATGCAATTGTCATCCTTGAGGTCTTGGATGGAAATACTTGGCCTGTTATTTATTCTGCTCCTAGACTTACTGGGGGATGGCAGAAATTTGCATCAGAGAACAATTTGAATGTGGGGGATGTTTGTGTTTTTGAACTAACCCAGAAAATCCAGGGCATTGCTTTCAAGGTTTCCATCTTTCAAGGTGCAGAGGAAACAAGTTGCCCCATTTCACAAGATATATATGACTTGATGCAGCATGTGCCGATGGACTTTGTCAGAAAGTATCTTATAAACATGAACCAGAAGGGGACACCGTTTGGTAATGCATTAGGGGCTGCTGGGCTTCCATAA 1128 0.4105 MTSARNKHPLPTAVHFFKIIPRTSLEHGLGLLLPKDFTRKYGDGMSNPVFLKPPDGTEWKAYWTKHDADIWFQKGWKEFATYYSLDHGHLLFFEYEGTSHFDVHIFDHSAVEIDYPSHGTHEGEDNLVESSDDSIEILGEQFSCQKTRVKSTVSSPQPSKEMEAGLTTNIEKSPNRVNLHQHVQTRSTSSQKAKFMKQEVDEDEGKGIFNTECPKGEQLTSTALNKATAFRSEHPSFRLIMKPSFINGYNLEIPQHFAEKYLKKTHAIVILEVLDGNTWPVIYSAPRLTGGWQKFASENNLNVGDVCVFELTQKIQGIAFKVSIFQGAEETSCPISQDIYDLMQHVPMDFVRKYLINMNQKGTPFGNALGAAGLP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00657 375 SMART B3_2 237 328 IPR003340 GO:0003677
Pumo8g00657 375 SMART B3_2 16 109 IPR003340 GO:0003677
Pumo8g00657 375 Pfam B3 DNA binding domain 16 108 IPR003340 GO:0003677
Pumo8g00657 375 Pfam B3 DNA binding domain 241 326 IPR003340 GO:0003677
Pumo8g00657 375 SUPERFAMILY DNA-binding pseudobarrel domain 230 325 IPR015300 -
Pumo8g00657 375 SUPERFAMILY DNA-binding pseudobarrel domain 14 116 IPR015300 -
Pumo8g00657 375 ProSiteProfiles B3 DNA-binding domain profile. 236 328 IPR003340 GO:0003677
Pumo8g00657 375 Gene3D - 217 329 IPR015300 -
Pumo8g00657 375 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Pumo8g00657 375 CDD B3_DNA 235 325 IPR003340 GO:0003677
Pumo8g00657 375 CDD B3_DNA 15 107 IPR003340 GO:0003677
Pumo8g00657 375 Gene3D - 11 110 IPR015300 -
Pumo8g00657 375 PANTHER B3 DOMAIN-CONTAINING 11 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00657 Pumo-Chr8 24267138 24269705 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00657 16 326 B3 DNA Binding Superfamily AT3G18990 30.994 6.89e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo8g00657 B3 1.3e-12 CL0405