Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00652 ATGCTTACTACAAAATCTTTGCAGAAACTCCCAAGAAATTTCCCTAGAAAATATGGAGATGAAATGTCAAACCCGTTGTTTGTCAAGCCTCCAGATGGCACTGAATGGAAAATATATTGGACCAAGCATGATGGTGAGATTTGGTTTCAAAAGGGTTGGAAGGAGTTTGCCACATTCTATTCTCTAGATCATGGCCACTTGCTGTTCTTTGAATATGAGGAAACTTCTCTTTTTGTTGTGCACATATTTGACAATAGTGCCCTAGAAATAGACTATCTTTCCCATCGTACTCCTGAGGGAAAGGACAACCATGTGCATAACAGTGATGATTCTGTTGAAATCTTGGATGAGCAATGTCATGTTGGAAAGGAAAACTTTGTGCAGATTAGTGATGATTGTGTTGAAATTTTGGATGAACAATGTCATGATGGAAAGGACAACATTGAGCAGATTAGTGATGATTCTGTTGAAATTTTGGATGAGCAATTTTCATGCAAAAAGACTCGAAAGAAATCCACAGTATCATCTCCTCAACCTTGTAAGAAAATGAAAAATAGCATAACTACAAATGTTGAAAGAAGCCCCAATGGGGTAAACTTGCATCAGCATGACCAAACTAGAAGTAGTAGCTCTCAAGAGGCAAAATTTATGAAGCAAAAATTAGACGAAGATGAGGGTAAAGGCTTTTTTCACATTGAATACCCAAAAGTGGAGCAGTTAACTTCTACCGCTTTAAGCAAAGCCACAACTTTCAGATCTGAACATCCCTCTTTCATGCTTGTCATGAAGCCATCCTTTATTGATAGAGATTACCTGGAAATACCACCACAATTTTCAGAACAATATTTGAAGAGAACACATGCAGTTGTCCTCCTGGAGGTCTTGGATGGGAGAAGTTGGCCTGTTATTTGTTCTGCTCCTAGAATTACTGTGGGATGGCAGAAATTTGCATCAGAAAATAATTTGAATGTGGGGGATGTCTGTGTTTTTGAGCTGATCCATAAGATCCAGGGCCTTGCTTTCAAAGTTTTCATCTTTCGAGGTGCAGAGGAACCGAGTAGCCCAATTTCAGAAGGTAATCCATTATTCCATTGTATCTACACAATTAGGATTTAG 1116 0.3862 MLTTKSLQKLPRNFPRKYGDEMSNPLFVKPPDGTEWKIYWTKHDGEIWFQKGWKEFATFYSLDHGHLLFFEYEETSLFVVHIFDNSALEIDYLSHRTPEGKDNHVHNSDDSVEILDEQCHVGKENFVQISDDCVEILDEQCHDGKDNIEQISDDSVEILDEQFSCKKTRKKSTVSSPQPCKKMKNSITTNVERSPNGVNLHQHDQTRSSSSQEAKFMKQKLDEDEGKGFFHIEYPKVEQLTSTALSKATTFRSEHPSFMLVMKPSFIDRDYLEIPPQFSEQYLKRTHAVVLLEVLDGRSWPVICSAPRITVGWQKFASENNLNVGDVCVFELIHKIQGLAFKVFIFRGAEEPSSPISEGNPLFHCIYTIRI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00652 371 Pfam B3 DNA binding domain 261 347 IPR003340 GO:0003677
Pumo8g00652 371 Pfam B3 DNA binding domain 8 85 IPR003340 GO:0003677
Pumo8g00652 371 PANTHER B3 DOMAIN-CONTAINING 9 342 - -
Pumo8g00652 371 ProSiteProfiles B3 DNA-binding domain profile. 257 349 IPR003340 GO:0003677
Pumo8g00652 371 MobiDBLite consensus disorder prediction 190 215 - -
Pumo8g00652 371 SUPERFAMILY DNA-binding pseudobarrel domain 8 86 IPR015300 -
Pumo8g00652 371 CDD B3_DNA 256 347 IPR003340 GO:0003677
Pumo8g00652 371 Gene3D - 237 350 IPR015300 -
Pumo8g00652 371 CDD B3_DNA 10 84 IPR003340 GO:0003677
Pumo8g00652 371 Gene3D - 2 87 IPR015300 -
Pumo8g00652 371 MobiDBLite consensus disorder prediction 190 218 - -
Pumo8g00652 371 SUPERFAMILY DNA-binding pseudobarrel domain 252 347 IPR015300 -
Pumo8g00652 371 SMART B3_2 258 350 IPR003340 GO:0003677
Pumo8g00652 371 SMART B3_2 3 86 IPR003340 GO:0003677
Pumo8g00652 371 ProSiteProfiles B3 DNA-binding domain profile. 1 86 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00652 Pumo-Chr8 23684910 23686223 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00652 9 369 B3 DNA Binding Superfamily AT3G18990 27.596 7.39e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo8g00652 B3 5.3e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00652 - - ccaj:109791753 503.827