Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00634 ATGACTTCTGCACGCAATAAGCATCCCTTGCCCACCGCAGTTCATTTCTTTAAGATTATCCCAAGAACAAGTCTTGAACATGGATTAGGATTACTTCTCCCAAAAGATTTCACTAGAAAATATGGAGATGGAATGTCAAACCCGGTGTTTCTCAAGCCTCCAGATGGCACTGAATGGAAAGCATATTGGACCAAGCATGATGCTGACATTCGGTTTCAAAAGGGTTGGAAAGAGTTTGCCACATACTATTCTCTAGATCATGGGCACTTGCTGTTCTTTGAATATGAGGGAACTTCTCATTTTGATGTGCACATATTTGATCACAGTGCCGTTGAAATAGACTATCCATCCCATGGTACTCATGAAGGAGAGGACAACCTTGTGGAGAGTAGTGACGATTCTATTGAAATTTTGGGTGAGCAATTTTCTTGCCAAAAGACTGGAGTGAAATCCACGGAGTCATCTCCTCAACCTTCCAAGGAAATGAAAGCTGGCCTAACTACAAATATTGAAAAAAGCCCCAATAGGGTAAACTTGCATCAGCATGTCCAAACTAGAAGTACTAGCTCTCAAAAGGCAAAATTTATGAAGCAAGAAGTAGATGAAGATGAGGGTAAAGGCATTTTTAACACTGAATGCCCAAAAGGGGAGCAGTTAACTTCTACTGCTTTAAACAAAGCGACAGCTTTCAGATCTGAACATCCCTCTTTCAGGCTTATCATGAAGCCATCCTTTATAAATGGATACAACCTGGAAATACCGCAGCATTTTGCAGAAAAATATTTGAAGAAAACACATGCAATTGTCATCCTTGAGGTCTTGGATGGAAGTACTTGGCCTGTTATTTATTCTGCTCCTAGACTTACTGGGGGATGGCAGAAATTTGCATCGGAGAACAATTTGAATGTGGGGGATGTTTGTGTTTTTGAACTAACCCGGAAAATCCAGGGCATTGCTTTCAAGGTTTCCATCTTTCAAGGTGCAGAGGAAACAAGTTGCCCCATTTCACAAGCTAGAACTGAATTCAGTGAAAATGCAAATATTGATCTTTCAAAATACTGCATAATGCATCCTTCCACCAACTGGACAGGTGGAAGTTCAAGTCAAAGATCTACACAGGTGGAAAGCCGCTTCAAGTTGAAGGTCTTAACAGCCAGAGCATTTAAAAGAGCTAGCAAATTCACATCAGAAAATCCTGTTTTCAAGGTCACTTTAACTATAAAATCGACGGCAAATATAACCAGACACGCGCATGTGCCGATGGACTTTGTCAGAAAGTATTTTATAAACATGAACCAGAAGGTGATGATGATACACTTTAGAAAGAAATTGTGGCCGGTAAAGTTTGTATTTCGTGAATGTTCTACTACTAGTTCAGGCAATCTCTCTACTGGTTGGGCCTCGTTTGTAAGAGAAAATGAACTGCAACGGGGAGATGTATGTATCTTTGAGCTCGTCAACAGAGAAGATGCAACACTTGATGCTCATGTTGTCAGGGGACACCGTTTGGTAATGCATTAG 1521 0.4076 MTSARNKHPLPTAVHFFKIIPRTSLEHGLGLLLPKDFTRKYGDGMSNPVFLKPPDGTEWKAYWTKHDADIRFQKGWKEFATYYSLDHGHLLFFEYEGTSHFDVHIFDHSAVEIDYPSHGTHEGEDNLVESSDDSIEILGEQFSCQKTGVKSTESSPQPSKEMKAGLTTNIEKSPNRVNLHQHVQTRSTSSQKAKFMKQEVDEDEGKGIFNTECPKGEQLTSTALNKATAFRSEHPSFRLIMKPSFINGYNLEIPQHFAEKYLKKTHAIVILEVLDGSTWPVIYSAPRLTGGWQKFASENNLNVGDVCVFELTRKIQGIAFKVSIFQGAEETSCPISQARTEFSENANIDLSKYCIMHPSTNWTGGSSSQRSTQVESRFKLKVLTARAFKRASKFTSENPVFKVTLTIKSTANITRHAHVPMDFVRKYFINMNQKVMMIHFRKKLWPVKFVFRECSTTSSGNLSTGWASFVRENELQRGDVCIFELVNREDATLDAHVVRGHRLVMH 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00634 506 ProSiteProfiles B3 DNA-binding domain profile. 236 328 IPR003340 GO:0003677
Pumo8g00634 506 SMART B3_2 16 109 IPR003340 GO:0003677
Pumo8g00634 506 SMART B3_2 404 499 IPR003340 GO:0003677
Pumo8g00634 506 SMART B3_2 237 328 IPR003340 GO:0003677
Pumo8g00634 506 ProSiteProfiles B3 DNA-binding domain profile. 402 501 IPR003340 GO:0003677
Pumo8g00634 506 SUPERFAMILY DNA-binding pseudobarrel domain 230 325 IPR015300 -
Pumo8g00634 506 CDD B3_DNA 15 107 IPR003340 GO:0003677
Pumo8g00634 506 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Pumo8g00634 506 SUPERFAMILY DNA-binding pseudobarrel domain 394 497 IPR015300 -
Pumo8g00634 506 PANTHER B3 DOMAIN-CONTAINING 316 489 - -
Pumo8g00634 506 Pfam B3 DNA binding domain 241 326 IPR003340 GO:0003677
Pumo8g00634 506 Pfam B3 DNA binding domain 409 499 IPR003340 GO:0003677
Pumo8g00634 506 Pfam B3 DNA binding domain 16 108 IPR003340 GO:0003677
Pumo8g00634 506 CDD B3_DNA 235 325 IPR003340 GO:0003677
Pumo8g00634 506 Gene3D - 383 501 IPR015300 -
Pumo8g00634 506 Gene3D - 217 329 IPR015300 -
Pumo8g00634 506 Gene3D - 11 110 IPR015300 -
Pumo8g00634 506 CDD B3_DNA 399 499 IPR003340 GO:0003677
Pumo8g00634 506 SUPERFAMILY DNA-binding pseudobarrel domain 14 116 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00634 Pumo-Chr8 22803488 22806029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00634 362 504 B3 DNA Binding Superfamily AT3G18990 27.586 2.69e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo8g00634 B3 4.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00634 - - ccaj:109794243 637.106