Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00614 ATGGCGACGGCGACGGCGGGTGGTGGTGGCGGCGGCGGCGTGGGCGTAATGGCAGGGAGTAGCACTGTCTCCACTCCGTCGAGTTGCGGCTGCGCGTGTTCTTCCAATTCCAACAACAACAGTGAGGACACTCTGATCGAATCGCCGATTCTGATATTCTGTTTATTCCACAAAGCAATTAGCTCAGAGCTCCAATCCCTCCACGCAACCGCCTTCGATTTCGTTTCCAACCGCCGCCATGAACCACACTCTCTCCTCAAAAAAATCAAATCCTTCTCCCACCGCTGCCACTTTCTTCGCACTCTCTACAAGCACCACTGCAATGCCGAGGACCAGGTCATATTTCCTGCCTTAGATAAACGAGTGAAGAATGTTGCACACACCTATTTTCTAGAACACGAGGGAGAGGGTCTTCTTTTTGATCAATTGTTCAAGTTGCTAAATTCCAATTTGCTAAATGAAGAGAGCTATCGAAGAGAATTAGCTTCTTGCATTGGAGCCCTTCGAACATCAATTAGCCAGCATATGTTTAAGGAAAAGGAACAGGTCTTCCCTTTGGTTATTGAGAAATTTTCATCTGAAGAGCAGGGGTCATTGGTATGGCAATTTCTTTGTAGCATACCGGTCAAAATGATGGCAGAATTTCTTCCCTGGCTTGCTTCATATATATCATCTGATGAGTATCAAGGTCTGCTTAAGTGCTTGTGCACAATAATTCCCAAAGAGAAGCTTCTTCATCAGGTCATCTTTGGATGGATGGAAGGACTAAAGATTAAACATAGAAACTGCACGCAAGATACCAAGGTTCAATGGCAGGATGTTGGTATGAGCAACCTACTCAGTCATAATGAAAAGGTGTATTGTAACTGTGGACCTTCCAAAACTGTCAAAAGGAAATGGGTGGAGCTAAATGAAGATCCTACTAATTCAAATATATCATGCCCTTTAGATGAATTGTTACTTTGGCATAAGGCTATAAAGCAAGAATTGAGTGATTTAGGTGAAACAGCTAGAAAGATACAACTATCTGAAGAATTTTCTGATTTGTCTTCATTTAATGAGAGGCTGCAATTTATAACTGAAGTCTGCATCTTCCATAGCATTGCTGAGGACCGAGTTATATTCCCTGCTATTAAAGCAGAGCTGTATTTTCTCCAAGACCTCACAGATGAAGAAGAACTCCAATTTGACAAGCTTAGGTGTCTGATAGAAAGTATCCAAAGTGCTGGAGCCGACTCATCATCTGCTGAATTTTATATTAAGTTGAGCTCCCATACCGAACAAATCACAGATACCATACTGAAGCACTTTGAAGATGAGGAAACTCAGGTTCTTCCACTTGCACGAAAACTATTCAGTCCCCAAAGGCAACGAGAACTACTTTATGAAAGCTTGTGCTCAATGCCATTGAAATTGATTGAGTGTGTGTTACCATGGCTGGTTGGATCACTTAATGAAACCGAAGTTAGATCATTTCTTCAGAATATGTATATGGCAGCCCCAGCTACAGATCATGCATTGGTTACCCTTTTCTCTGGTTGGGCATGCAATGGATATTCTGGGAACAATTGTTTCAATTCAAGCGCAACAGGTTTATGTCCTGATAGGAGATTGATGGAAATACCATTTTGCATGTGTGAACCTTCATTCAGTCTCAATGAAAAATCTTCACCCATTCAACAAGATGATGAAAGTGGCAGTATTGGACCAGTCAAGCATGGAAAGCCCGACTCAAGGCAAGACAATGATGTTGCTAACTTGATGGTAACTGGAGAAACCCTTAACTCACCTCATAATCAGTCTTGCTGTGTCCCTGAATTAAGGGCGAATGCAAGTAATCTAGGGCTTGGTTCTTTGGCCCTAACAAAGTCTCTGCGAGAACTATCTGATTACCCATCTGCACCTTCCCTCAATTCCAGTCTTTTTATGTGGGAAACCAATTTAGTCTCTGCTGACAATCAATGCATTACACGGCCTATTGATAACATATTTAAATTTCACAAAGCCATACGTAAAGACTTGGAGTATTTAGATGTTGAATCTGTAAAACTAAATGATTGTGATGAAATTTTCATTCAGCAATTCACTGGTAGATTTCGCTTGTTGTGGGCTTTGTATAGAGCTCATAGTAATGCCGAGGATGATATAGTATTTCCAGCATTAGAATCAAAAGATAATCTTCACAATGTGAGCCATTCTTACACTTTGGATCACCAGCAGGAAGAGAAGTTGTTTTTGGATATCTCTTCCGGACTGGCTCAGCTTACTCAACTACATGAATTGCTGTATAAAAAGAATTCGTCTGATCATCTAACCAATTGTTACTCTAATTATGCTGGTTGCTCTCATACTGATACTGTACAAAATTACAATGAGCTCTCTACAAAGATTCAGGGCATGTGTAAATCTATCAGAGTGACACTGGATCAACATATTCTCAGGGAGGAACTTGAATTATGGCCATTGTTTGATAGACACTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTCATATAATTGGTACTACAGGGGCAGAAGTTCTCCAGTCAATGCTGCCATGGGTAACTTCTGCTCTCACACAAGACGAGCAAAACAAAATGATAGATACATTGAAACAGGCTACAAAAAACACTATGTTCAGTGAGTGGCTTAATGAATGGTGGAAAGGACCTGCTTTATCTTTAAATATCACCACACCTGGAGATCACTCACTAGGTACTGATGCCTATGAAGATTCAGAGCATAGCTTTCAAGCATTCCGGCCTGGATGGAAAGATATATTCAGGATGAACCAGAATGAACTTGAATCAGAAATAAGAAAAGTTTCTCAAGATTCAACTCTTGATCCAAGAAGAAAAGCATATCTTATTCAAAATCTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTCAGTCATCAGGAGGTGAATCTTCAAAAGGGGAAGATTTATTGGAAACTTCACCTTCATTTCATGATCCAGAGAAAAAAATCTTTGGTTGCGAGCATTACAAAAGAAATTGTAAACTCCGTGCTGCTTGCTGTAAAAAACTATTCACGTGTCAGTTCTGTCATGACAAAGTTAGTGACCATTCAATGGATAGGTAA 3114 0.4069 MATATAGGGGGGGVGVMAGSSTVSTPSSCGCACSSNSNNNSEDTLIESPILIFCLFHKAISSELQSLHATAFDFVSNRRHEPHSLLKKIKSFSHRCHFLRTLYKHHCNAEDQVIFPALDKRVKNVAHTYFLEHEGEGLLFDQLFKLLNSNLLNEESYRRELASCIGALRTSISQHMFKEKEQVFPLVIEKFSSEEQGSLVWQFLCSIPVKMMAEFLPWLASYISSDEYQGLLKCLCTIIPKEKLLHQVIFGWMEGLKIKHRNCTQDTKVQWQDVGMSNLLSHNEKVYCNCGPSKTVKRKWVELNEDPTNSNISCPLDELLLWHKAIKQELSDLGETARKIQLSEEFSDLSSFNERLQFITEVCIFHSIAEDRVIFPAIKAELYFLQDLTDEEELQFDKLRCLIESIQSAGADSSSAEFYIKLSSHTEQITDTILKHFEDEETQVLPLARKLFSPQRQRELLYESLCSMPLKLIECVLPWLVGSLNETEVRSFLQNMYMAAPATDHALVTLFSGWACNGYSGNNCFNSSATGLCPDRRLMEIPFCMCEPSFSLNEKSSPIQQDDESGSIGPVKHGKPDSRQDNDVANLMVTGETLNSPHNQSCCVPELRANASNLGLGSLALTKSLRELSDYPSAPSLNSSLFMWETNLVSADNQCITRPIDNIFKFHKAIRKDLEYLDVESVKLNDCDEIFIQQFTGRFRLLWALYRAHSNAEDDIVFPALESKDNLHNVSHSYTLDHQQEEKLFLDISSGLAQLTQLHELLYKKNSSDHLTNCYSNYAGCSHTDTVQNYNELSTKIQGMCKSIRVTLDQHILREELELWPLFDRHFSVEEQDKIVGHIIGTTGAEVLQSMLPWVTSALTQDEQNKMIDTLKQATKNTMFSEWLNEWWKGPALSLNITTPGDHSLGTDAYEDSEHSFQAFRPGWKDIFRMNQNELESEIRKVSQDSTLDPRRKAYLIQNLMTSRWIASQQKSSQSSGGESSKGEDLLETSPSFHDPEKKIFGCEHYKRNCKLRAACCKKLFTCQFCHDKVSDHSMDR 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00614 1037 CDD Hr-like 317 446 - -
Pumo8g00614 1037 ProSiteProfiles Zinc finger CHY-type profile. 996 1037 IPR008913 GO:0008270
Pumo8g00614 1037 CDD Hr-like 663 821 - -
Pumo8g00614 1037 MobiDBLite consensus disorder prediction 967 987 - -
Pumo8g00614 1037 Pfam Hemerythrin HHE cation binding domain 57 187 IPR012312 -
Pumo8g00614 1037 Pfam Hemerythrin HHE cation binding domain 315 448 IPR012312 -
Pumo8g00614 1037 Pfam Hemerythrin HHE cation binding domain 659 822 IPR012312 -
Pumo8g00614 1037 SUPERFAMILY CHY zinc finger-like 995 1036 IPR037274 GO:0008270
Pumo8g00614 1037 Gene3D nmb1532 protein domain like 656 886 - -
Pumo8g00614 1037 MobiDBLite consensus disorder prediction 555 582 - -
Pumo8g00614 1037 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 702 1037 - -
Pumo8g00614 1037 MobiDBLite consensus disorder prediction 967 993 - -
Pumo8g00614 1037 Gene3D nmb1532 protein domain like 319 463 - -
Pumo8g00614 1037 Gene3D nmb1532 protein domain like 48 205 - -
Pumo8g00614 1037 Pfam CHY zinc finger 1003 1037 IPR008913 GO:0008270
Pumo8g00614 1037 CDD Hr-like 55 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00614 Pumo-Chr8 22145470 22154362 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00614 1 1037 C2H2 Transcription Factor Family AT3G18290 55.829 0.0 1069
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00614 K16276 - gmx:100783072 1860.88