Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00612 ATGGCAACAATGACATCACCCTCTTCCCCTTACCTCCTCCTCGCCCTGTCGTTTCACCTTTCCCTCGTCGTTCACTCCATCAACCCTAACCCCGACTTCCACCCCCTCATGTCGTTCAAAGCCACCTCCGACCCTTCCAACAAATCACTCTCCCAATGGAACTCTTCATCTTCCAACCCCTGCACCTGGCACGGCGTCTCCTGCCTCCGCAAAACCAACCGCGTCTCCGGTCTCGTCCTCGAAGGCCTCGACCTCACCGGCTCCATCCTCCCCCTCACCTCCCTCTCCCAGCTCCGCATCCTCAGCCTCAAACGCAACCGTTTCGAGGGCCCCATTCCCTCCTCTCTTTCCAACCTAACCGCACTCAAGCTCCTCTTCCTCTCTCACAACCACTTTTCCGGGGACTTCCCCGCCGCGGTAACCTCCCTCTCCCACCTCTACCGCCTCGATCTCTCCCACAACAGCCTCTCCGGCGAGATTCCCGCGGCGGTCAACAAGTTGACCCACCTCCTCACCCTCCGCGTCGACTCCAACAACCTCCGCGGCCGCATTCCCGACATCACCAACCTATCTTATCTTCAAGATTTTAACGTCTCCAGTAACCGCCTCTCCGGTCCAATACCGGATTCCCTTTCACGTTTCCCCGGATCCGCGTTTTCTCACAACCTTTTTCTCTGTGGAGTTCCGTTACAAAAATGCAAAGCCATCATCCCTGCCCTCGCTTCGCCGTTGAAGCCTCAAAACGACACCGTTTTGCATAAAACTCACGGAGAGCCAAGAATTGGGGTGATGGTTTTGATTATTATCGTTCTCGGGGACGTGCTGGTGCTGGCTCTGGTGTCGCTGCTTCTCTACTGCTATTTCTGGCGGAACTACACTGCTTCATTGAAGGAAGTGAATAATAACAAAGAGGGGAATGATAATAATACTCATTCCAGGGTGGTGGTGTACAAAGGGTGTGCGGAGAGGGGTGGAAACAGCGATGGGATGGTGTTTTTGGAAGGGGAGAAGAGGTTCGAGGTGGAGGAGCTGCTGCGCGCGTCGGCGGAGATGCTGGGTAAGGGCGTGTTTGGGACGGCGTATAAAGCGGTGCTCGATGATGGGACCGTTGTTGCGGTGAAGAGGCTCAAGAAGGAGGTGAGTGTGGTAGGGAAGAAAGATTTCCAGCAGCGAATGGAAGCACTTGGAAGGTTGAGACACTGCAATGTTGTTCCTCTGAGGGCTTACTATTTAGCCAAAGATGAGAAGCTGCTCGTGTCTGATTACATGCCCAATGGTAGCTTGTCCTGGCTCCTCCACGGTAACCGAGGACCGGGACGGACCCCACTGGACTGGACCACGAGGCTCAAGATCGCAGCTGGAGCGGCACGAGGCATAGCCTTCATTCACAACAACACTGATAATCCTAAACTCACCCACGGTAACATCAAATCCACCAACGTCCTCGTCGACGTGGCGGGCACCGCCCGCGTCTCCGATTTCGGCCTCTCCACCATCTTCGCGGGCCCCACAACTTCGAGATCCAACGGCTACCGCGCGCCCGAGGCATCATCATCGGACGGCCGAAAGCAGACCCAGATGTCCGACGTGTACTCCTTCGGCGTCCTCCTGATGGAGATTCTCACCGGGAAGTGCCCCTCCGCCGCCGCCGCCGCCGCGGACGGCGGCTGCGCGGAGGAGGTGGAGCTTCCCCGGTGGGTCCGGTCGGTGGTGAGGGAGGATTGGACGGCGGAGGTGTTCGACCTCGAGCTGATGAGGTATAGGGACATCGAGGAGGAGATGGTGGCGCTGTTGCAGATTGCTATGGCGTGCACTGAGACCGCGCCCGATCAACGGCCCAGGATGAGCCACGTGGCGAAGATGATCGAGGAGTTGAGTGGGGTCCACGTGTCGCCGTGTCATGACGCGTTGGACTCGGTTTCGGAGTTGCATTCCGTGCCTGAAGATGCATGTACAGGAGGAGCTGGAGCTAGTGCTAGTGCTAGTGCTAGTCAATGA 1998 0.5731 MATMTSPSSPYLLLALSFHLSLVVHSINPNPDFHPLMSFKATSDPSNKSLSQWNSSSSNPCTWHGVSCLRKTNRVSGLVLEGLDLTGSILPLTSLSQLRILSLKRNRFEGPIPSSLSNLTALKLLFLSHNHFSGDFPAAVTSLSHLYRLDLSHNSLSGEIPAAVNKLTHLLTLRVDSNNLRGRIPDITNLSYLQDFNVSSNRLSGPIPDSLSRFPGSAFSHNLFLCGVPLQKCKAIIPALASPLKPQNDTVLHKTHGEPRIGVMVLIIIVLGDVLVLALVSLLLYCYFWRNYTASLKEVNNNKEGNDNNTHSRVVVYKGCAERGGNSDGMVFLEGEKRFEVEELLRASAEMLGKGVFGTAYKAVLDDGTVVAVKRLKKEVSVVGKKDFQQRMEALGRLRHCNVVPLRAYYLAKDEKLLVSDYMPNGSLSWLLHGNRGPGRTPLDWTTRLKIAAGAARGIAFIHNNTDNPKLTHGNIKSTNVLVDVAGTARVSDFGLSTIFAGPTTSRSNGYRAPEASSSDGRKQTQMSDVYSFGVLLMEILTGKCPSAAAAAADGGCAEEVELPRWVRSVVREDWTAEVFDLELMRYRDIEEEMVALLQIAMACTETAPDQRPRMSHVAKMIEELSGVHVSPCHDALDSVSELHSVPEDACTGGAGASASASASQ 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00612 665 Gene3D Phosphorylase Kinase; domain 1 310 422 - -
Pumo8g00612 665 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 189 - -
Pumo8g00612 665 ProSiteProfiles Protein kinase domain profile. 346 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00612 665 Gene3D Transferase(Phosphotransferase) domain 1 423 636 - -
Pumo8g00612 665 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 626 IPR046959 -
Pumo8g00612 665 SUPERFAMILY L domain-like 31 231 - -
Pumo8g00612 665 Gene3D Ribonuclease Inhibitor 30 186 IPR032675 -
Pumo8g00612 665 ProSitePatterns Protein kinases ATP-binding region signature. 352 385 IPR017441 GO:0005524
Pumo8g00612 665 Pfam Protein kinase domain 349 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00612 665 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 423 631 - -
Pumo8g00612 665 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Pumo8g00612 665 Gene3D Ribonuclease Inhibitor 187 234 IPR032675 -
Pumo8g00612 665 SUPERFAMILY Protein kinase-like (PK-like) 350 622 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00612 Pumo-Chr8 22083774 22088838 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00612 32 653 Receptor kinase-like Gene Family AT1G68400 58.887 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo8g00612 Pkinase 1.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00612 - - gmx:100810749 931.398