Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00607 ATGGCAACAATGACATCGCCCTCTTCCCCTTACCTCCTCCTCGCCCTGTCGTTTCATCTTTCCCTCGTCGTTCACTCCATCAACCCCAACCCCGACTTCCACCCCCTCATGTCGTTCAAAGCCACCTCCGACCCTTCCAACAAATCACTCTCCCAATGGAACTCTTCATCTTCCAACCCCTGCACCTGGCACGGCGTCTCCTGCCTCCGCAAAACCAACCGCGTCTCCGGTCTCGTCCTCGAAGGCCTCGACCTCACCGGCTCCATCCTCCCCCTCACCTCCCTCTCCCAGCTCCGCATCCTCAGCCTCAAACGCAACCGTTTCGAGGGCCCCATTCCCTCCTCCCTTTCCAACCTAACCGCACTCAAGCTCCTCTTCCTCTCTCACAACCACTTTTCCGGGGACTTCCCCGCCGCGGTAACCTCCCTCTCCCACCTCTACCGCCTCGATCTCTCCCACAACAGCCTCTCCGGCGAGATTCCCGCGTCGGTCAACAAGTTGACCCACCTCCTCACCCTCCGCGTCGACTCTAACAACCTCCGCGGCCGCATTCCCGACATCACCAACCTATCTTATCTTCAAGATTTTAACGTCTCCAGTAACCGCCTCTCCGGTCCAATACCGGATTCCCTTTCACGTTTCCCCGGATCCGCGTTTTCTCACAACCTTTTTCTCTGTGGAGTTCCGTTACAAAAATGCAAAGCCATCATCCCTGCCCTCGCTTCGCCGTTGAAGCCTCAAAACGACACCGTTTTGCATAAAACTCACGGAGAGCCAAGAATTGGGGTGATGGTTTTGATTATTATCGTTCTCGGGGACGTGCTGGTGCTGGCTTTGGTGTCGCTGCTTCTCTACTGCTATTTCTGGCGGAACTACACTGCTTCAATATTGAAGGAAGTGAATAATAACAAAGAGGGGAATGATAATAATACTCATTCCAGGGTGGTGGTGTACAAAGGGTGTGCGGAGAGGGGTGGAAACAGCGATGGGATGGTGTTTTTGGAAGGGGAGAAGAGGTTCGAGGTGGAGGAGCTGCTGCGCGCGTCGGCGGAGATGCTGGGTAAGGGCGTGTTTGGGACGGCGTATAAAGCGGTGCTCGATGATGGGACCGTTGTTGCGGTGAAGAGGCTCAAGAAGGAGGTGAGTGTGGGAGGGAAGAAAGAGTTCCAGCAGCGAATGGAAGCACTTGGAAGGTTGAGACACTGCAATGTTGTTCCTCTGAGGGCTTACTATTTCGCCAAAGATGAGAAGCTGCTCGTGTCCGATTACATGCCCAATGGTAGCTTGTCCTGGCTGCTCCACGGTAACCGAGGACCGGGACGGACCCCACTGGACTGGACCACGAGGCTCAAGATCGCAGCTGGAGCGGCACGAGGCATAGCCTTCATTCACAACAACACTGATAATCCTAAACTCACCCACGGTAACATCAAATCCACCAACGTCCTCGTCGACGTGGCGGGCACCGCGCGCGTCTCCGATTTCGGCCTCTCCACCATCTTCGCGGGCCCCACCAGATCCAACGGCTACCGCGCGCCGGAGGCATCATCATCATCGGACGGCCGGAAGCAGACCCAGCCGTCCGACGTGTACTCCTTCGGCGTCCTCCTGATGGAGATTCTCACCGGGAAGTGTCCCTCCGCCACCACCGCCGCCGCGGACGGCGGCTGCGCGGCGGAGGTGGAGCTTCCCCGGTGGGTCCGGTCGGTGGTGAGGGAGGAGTGGACGGCGGAGGTGTTCGACCTCGAGCTGATGAGGTATAGGGACATCGAGGAGGAGATGGTGGCGCTGTTGCAGATTGCTATGGCGTGCACTGAGACCGCGCCCGATCAACGGCCCAGGATGAGCCACGTGGCGAAGATGATCGAGGAGTTGAGTGGGGTCCACGTGTCGCCGTGTCATGACGCGTTGGACTCGGTTTCGGAGTTGCATTCCGTGCCTGAAGATGCATGA 1953 0.5765 MATMTSPSSPYLLLALSFHLSLVVHSINPNPDFHPLMSFKATSDPSNKSLSQWNSSSSNPCTWHGVSCLRKTNRVSGLVLEGLDLTGSILPLTSLSQLRILSLKRNRFEGPIPSSLSNLTALKLLFLSHNHFSGDFPAAVTSLSHLYRLDLSHNSLSGEIPASVNKLTHLLTLRVDSNNLRGRIPDITNLSYLQDFNVSSNRLSGPIPDSLSRFPGSAFSHNLFLCGVPLQKCKAIIPALASPLKPQNDTVLHKTHGEPRIGVMVLIIIVLGDVLVLALVSLLLYCYFWRNYTASILKEVNNNKEGNDNNTHSRVVVYKGCAERGGNSDGMVFLEGEKRFEVEELLRASAEMLGKGVFGTAYKAVLDDGTVVAVKRLKKEVSVGGKKEFQQRMEALGRLRHCNVVPLRAYYFAKDEKLLVSDYMPNGSLSWLLHGNRGPGRTPLDWTTRLKIAAGAARGIAFIHNNTDNPKLTHGNIKSTNVLVDVAGTARVSDFGLSTIFAGPTRSNGYRAPEASSSSDGRKQTQPSDVYSFGVLLMEILTGKCPSATTAAADGGCAAEVELPRWVRSVVREEWTAEVFDLELMRYRDIEEEMVALLQIAMACTETAPDQRPRMSHVAKMIEELSGVHVSPCHDALDSVSELHSVPEDA 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00607 650 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Pumo8g00607 650 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 188 - -
Pumo8g00607 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 626 IPR046959 -
Pumo8g00607 650 Gene3D Phosphorylase Kinase; domain 1 319 423 - -
Pumo8g00607 650 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 424 631 - -
Pumo8g00607 650 Pfam Protein kinase domain 350 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00607 650 Gene3D Ribonuclease Inhibitor 30 92 IPR032675 -
Pumo8g00607 650 Gene3D Ribonuclease Inhibitor 93 236 IPR032675 -
Pumo8g00607 650 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Pumo8g00607 650 FunFam pollen receptor-like kinase 1 319 423 - -
Pumo8g00607 650 ProSiteProfiles Protein kinase domain profile. 347 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00607 650 Gene3D Transferase(Phosphotransferase) domain 1 424 636 - -
Pumo8g00607 650 SUPERFAMILY Protein kinase-like (PK-like) 351 622 IPR011009 -
Pumo8g00607 650 SUPERFAMILY L domain-like 31 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00607 Pumo-Chr8 21754533 21759120 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00607 32 649 Receptor kinase-like Gene Family AT1G68400 58.589 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo8g00607 Pkinase 8.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00607 - - gmx:100810749 924.08