Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00596 ATGGATCAAGGGAACACAGGCACTCGTGTGGATGCAAACCCAAAACCCCCCAGTCACGAAGAAACACAATCTTTGGATTTTGATGCTGAGTGTGAGGCCAAAATGACCAACTCTGCTGAAAACGGAGCAGGAGGTTCTTCTTGTGTTCAAGAAGGTGTGAAGAAAAAGCGTGGCAGAAAAAGTAAAAAGGAGAAGGAAGAGATGGAAAAGAAGAAGATGTTAGATGCTACTGCCGTGGAAGGTGGGGTTTCCGAGCAGAGACCCAGTAGAAAAAGAAAGAAAGATGATGAAATGGTTGAGTTTGAAATGTCTGGTACTGAGAAAAAATATGGTCTTAGGGGCGGTGAACAAGAGATGGAGCCAAAAGTCAACAGGAAAAAGGCTAAGTGTGATGAAGAGGGGCCCTTAACGTGCCATCAATGTAAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCAAATGCTGTGAGCGGAAAAGATTTTGCCTACTCTGTTTACAAGCTTGGTATCCTCATTTGAAGGAGGATGATATTGCTGAGAAATGTCCTGTGTGCTGTGGTAATTGCAATTGCAAAGCATGCTTGAGCTCTGATGAGCTTATTAAGCAAATGAGGGAAGATGCAAAAACTGATAAAGATGAGAAGGTTGAACTCTCTATGTATTTGCTGCAATTACTTCTTCCTTATTTAAGGCAGCTGGATGAAGAACAGTTGATTGAGAATGAGACAGAAGCTAAGATACAAGGACTCTCAGTCTCCAAGCTAAATATAGCTAAGGCAGATTACTCTATAGAGGAGCGTGTGTACTGTGACAACTGCAAAACATCAATATTTGATTACCATAGAAGCTGCACAAAATGCTCTTTTGACCTTTGTCTCATCTGTTGCCGTGAGCTTCGTAGTGGGCAGCTTGTAGGTGGTGCAGATCCAATAGAGTTGGAGTTTGTTTGGCGAGGTCTTGGTTACTTGCATGCTGAAAAAAAAGATGATAAGGTAATGCAAAATGCATCAGATGCTGATGCTGATAGGCCTGAGGTTTGCGAATGGTCAACATCTGGGTGGCATGCACAAAGTGATGGTAGCATTCCTTGTCCAAAAGTCAATGATGAATGTAACCATAGTTTTCTTGAACTGAGAAGCATATTGGGTCAACATTTTATCTCTGTGTTAGTATGTAAAGCGAAAGAACTAGTGCAAGCATACAAGCTTCAAAATGTAGTTAAGACCCCTGACAACTTCTGTTCATGTTTGAAGCTTGATAGAAACACAGATGTTAGATATAATAATACGAGGAAGGCTGCTTCACGAGAGGATTTGTCCGACAACTATTTATACTGTCCTAAGGCTGTAGATCTTCAGTACGAGGATTTAAGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTCAGCAATTTGCTTGAATGTACGTCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTACGTCATGTAACTAATACCAAGCGTGGTCAACATTTGGCTGTGAAAACAATTGATTGCTTAGATTGGACTGAGGGGGAAATTAATATCCACCAATTCTTTACTGGGTATACAAACGGTCGTAAGGATTGGCTTGCTTGGCCTCAGATATTGAAATTAAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACAATTGCCTCGTCATTGTGCTGAGTTCATATCTTCCTTGCCCTTCAAGGATTATACTGATCCTCACAAAGGTGCTCTTAACCTTGCTGTGAAGTTGCCTAATGGTTCTCTAAAGCCAGACATGGGGCCAAAAACATATATTGCTTATGGATTTCCTCAGGAGCTTGGGCGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGGATTCTGATCAACTTACTGTCATTGAGAAGTTGAAACAAAAGCACCTTGAGCAAGACAAAAGGGAGCTACTTGGTGATGATCAGGATGGAGAAACTAATGTTGACATGCTTAATAATTCATCATCTACCATAAATGCTTTGGACAAGCAAAATAGTGTTGAAGTCATGGAACATGAAGGTGGATTATGTGATGGGAACGAAGTTGATCAGTTTCATCAACCCTCTGGTAGTAATGAGGTTGCCATTGCTAACGAGGATTGTCTTTCATGTGGATCAGAGCTCAAAGAGGTTGACGAAGTAAAAATAAAACAAGGTGATTTGTTGTTTGGGGGGGATGCTTCAGATGGTGCTCTCTGGGATATTTTTCGGAGACAGGATGTACCTAAATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATCTGACTACGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGTTAGGAGATGCTGTTTTTATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATCAAGGTTGCGATGGATTTTGTGTCTCCTGAAAATGTTGGGGAGTGCTTTCGTTTGACAGAGGAATTTCGCACACTTCCAATTAATCACAGGTCTACTGAGGACAAATTGGAGGTGAAGAAAATGACAATATATGCAATGAAAGATGTGATTGAAAAGTTGGAGAAAGCAAGGTCTGGGTTAACAAAGGGTCCAGAGTAA 2733 0.4153 MDQGNTGTRVDANPKPPSHEETQSLDFDAECEAKMTNSAENGAGGSSCVQEGVKKKRGRKSKKEKEEMEKKKMLDATAVEGGVSEQRPSRKRKKDDEMVEFEMSGTEKKYGLRGGEQEMEPKVNRKKAKCDEEGPLTCHQCKRNDKGRVVRCKCCERKRFCLLCLQAWYPHLKEDDIAEKCPVCCGNCNCKACLSSDELIKQMREDAKTDKDEKVELSMYLLQLLLPYLRQLDEEQLIENETEAKIQGLSVSKLNIAKADYSIEERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRSGQLVGGADPIELEFVWRGLGYLHAEKKDDKVMQNASDADADRPEVCEWSTSGWHAQSDGSIPCPKVNDECNHSFLELRSILGQHFISVLVCKAKELVQAYKLQNVVKTPDNFCSCLKLDRNTDVRYNNTRKAASREDLSDNYLYCPKAVDLQYEDLRHFQWHWEKGEPVIVSNLLECTSGLSWEPLVMWRALRHVTNTKRGQHLAVKTIDCLDWTEGEINIHQFFTGYTNGRKDWLAWPQILKLKDWPPSNLFEEQLPRHCAEFISSLPFKDYTDPHKGALNLAVKLPNGSLKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLDSDQLTVIEKLKQKHLEQDKRELLGDDQDGETNVDMLNNSSSTINALDKQNSVEVMEHEGGLCDGNEVDQFHQPSGSNEVAIANEDCLSCGSELKEVDEVKIKQGDLLFGGDASDGALWDIFRRQDVPKLQEYLKKHFREFRHVHCCPLKQVIHPIHDQTFYLTTEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVAMDFVSPENVGECFRLTEEFRTLPINHRSTEDKLEVKKMTIYAMKDVIEKLEKARSGLTKGPE 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00596 910 ProSiteProfiles JmjC domain profile. 576 868 IPR003347 -
Pumo8g00596 910 Gene3D Cupin 443 877 - -
Pumo8g00596 910 MobiDBLite consensus disorder prediction 1 20 - -
Pumo8g00596 910 Pfam JmjC domain, hydroxylase 755 851 IPR003347 -
Pumo8g00596 910 MobiDBLite consensus disorder prediction 1 97 - -
Pumo8g00596 910 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 32 902 IPR045109 GO:0032454|GO:0033169
Pumo8g00596 910 SMART cupin_9 557 868 IPR003347 -
Pumo8g00596 910 MobiDBLite consensus disorder prediction 62 76 - -
Pumo8g00596 910 SUPERFAMILY Clavaminate synthase-like 455 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00596 Pumo-Chr8 20886101 20897315 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo8g00596 JmjC 1.2e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00596 K15601 - gmx:100797799 1598.95