Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00592 ATGGACAATAATGATATTCTGGGTCTTCTCAAACTTCGAATTAAAAGAGGTGTTAATCTTGCAATTCGCGATGCTCGTGCCAGCGATCCTTATGTCGTCGTCAAGATGGGTGATCAGAAGGTGAAGACTCGTGTTGTAAAAAACAACTGCAATCCTGACTGGAATGAAGAATTGACCCTTTCTATAAGGGACGTTAAAACCCCAATACATCTGACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGATGCAGAGATAGACTTAAAACCATATGTTCAGTGCATGAAGATGGGGTTGGGCAAGCTCCCAAATGGTTGTTCACTCAAGAGGATTAAGCCAGATAGAACTAATTGCCTTGCTGAAGAGAGCAGCTGCATTTGGCAAAATGGAAAGATTGTCCAAGAAATGTTCTTGAGATTGAGAAATGTTGAGAGTGGGGAAATACTTGTGGAAATTGAGTGGGTTGATGTTGTTGGTTGCAAGGGCTTATCACAAGTACAACTCTAG 519 0.4143 MDNNDILGLLKLRIKRGVNLAIRDARASDPYVVVKMGDQKVKTRVVKNNCNPDWNEELTLSIRDVKTPIHLTVYDKDTFSVDDKMGDAEIDLKPYVQCMKMGLGKLPNGCSLKRIKPDRTNCLAEESSCIWQNGKIVQEMFLRLRNVESGEILVEIEWVDVVGCKGLSQVQL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00592 172 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Pumo8g00592 172 CDD C2_ArfGAP 7 150 - -
Pumo8g00592 172 Gene3D C2 domain 7 165 IPR035892 -
Pumo8g00592 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 6 165 IPR044562 -
Pumo8g00592 172 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 100 IPR035892 -
Pumo8g00592 172 SMART C2_3c 9 104 IPR000008 -
Pumo8g00592 172 Pfam C2 domain 9 94 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00592 Pumo-Chr8 20745700 20755550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00592 40 169 C2H2 Transcription Factor Family AT1G70790 65.909 7.49e-61 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00592 - - gmx:100788395 334.724