Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00579 ATGTCATTCCATTTATTATTTATTCTAAACTTTGTGGTCCTTATCATCACCCTTTTGTCACAAAACTCTGATGGTTCCCTGAACCCAAAGTTTGAAGCTTGTGAACCCAAAACATGCGGCAATAATCAAACTATAAGCTATCCTTTCTACATTGAAGGGATACAAGAACCCTTTTGTGGGTACCCTGGTTTTGGCCTCTCTTGTGGCAACGATGGCTTCCCATTTCTCAACATGTCTAATGCCAAATACATGATCCACCAGATATTCTACAACAACAACTCACTGCGTGTGTCCAATGCTGTGTTTTCAAGATCAAACACTAGGAGTTGTCTTCTTCCTCGTACACAGAACCTCACTCTTTCTGGTACGAGGTTGGCTCTTGCTCCCAAACAAAGGGAGCTATTCTTGTTGTTCGGATGTGACCTGCATGGAGGGTTGCAAGAGCACATAATTGGGTGTTCTGAAGAGAACAAAACCGGTTCAGTTGTGGCCATGAATAGGGAAGACAAAAACTTGAGCTTTGCTTTGATGAATTGCAAGGGTGGGGTGGTGAATGTGACAGTGGAAGATGAAGAAGGAGGGATTCAAGAAGCACTGAGAAGAGGGTTCATGGTGACTTGGACTGTCAGTGATTGCAACAAGTGCAAAAACAGTGGAGGAAAGTGTGGGTTTGACACAGACATATTCAGTTTCAGATGTTACTGCCCTCATGATACTCATGCTCGAAAATGTTCCCAAGAAAAATCTGGAAATTCGGTTGTTATACTGGCAACAGTTTTTGCTGTTGCAGGATTTGGAGTTTTAATTATTGCAGTATACTGTTTTAGAAGGAATCTGTGGTTCATATTCTGGAAGGAGAAATCTAGAGCTAATCAAGATTTTGAGGCCTTTCTTAGGAATTATGGACCACTTGCTGTAAGAAGATATAGCTACTTAGAAATAAAGAAAATGACCAACTCTTTCAAAGAAAAATTAGGCCAAGGAGGCTATGGATGTGTGTTCAAAGGGAAGTTAGAAGAAGAATCTCTAGTTGCTGTCAAGATCTTGAATGAATTAAAAGGAAATGGAGAAGAATTTATGAATGAGGTAGCAAGTATTAGCAGGACTTCTCACTGTGAACATTGTCACTCTTATTGGATTTTGCTTTGA 1149 0.403 MSFHLLFILNFVVLIITLLSQNSDGSLNPKFEACEPKTCGNNQTISYPFYIEGIQEPFCGYPGFGLSCGNDGFPFLNMSNAKYMIHQIFYNNNSLRVSNAVFSRSNTRSCLLPRTQNLTLSGTRLALAPKQRELFLLFGCDLHGGLQEHIIGCSEENKTGSVVAMNREDKNLSFALMNCKGGVVNVTVEDEEGGIQEALRRGFMVTWTVSDCNKCKNSGGKCGFDTDIFSFRCYCPHDTHARKCSQEKSGNSVVILATVFAVAGFGVLIIAVYCFRRNLWFIFWKEKSRANQDFEAFLRNYGPLAVRRYSYLEIKKMTNSFKEKLGQGGYGCVFKGKLEEESLVAVKILNELKGNGEEFMNEVASISRTSHCEHCHSYWILL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00579 382 ProSiteProfiles Protein kinase domain profile. 319 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo8g00579 382 SUPERFAMILY Protein kinase-like (PK-like) 300 371 IPR011009 -
Pumo8g00579 382 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Pumo8g00579 382 Pfam Wall-associated receptor kinase C-terminal 167 237 IPR032872 -
Pumo8g00579 382 Pfam Wall-associated receptor kinase galacturonan-binding 34 98 IPR025287 GO:0030247
Pumo8g00579 382 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 5 371 IPR044652 GO:0004672
Pumo8g00579 382 Gene3D Phosphorylase Kinase; domain 1 297 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00579 Pumo-Chr8 20600159 20603147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00579 1 371 Receptor kinase-like Gene Family AT1G66910 29.383 2.24e-36 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pumo8g00579 WAK_assoc 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00579 - - lang:109359375 596.66