Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00564 ATGAGCAAGGTGGAGAATTATACCTTGACCAATCAAGGACTCATCATGCCTCTCTCCAATAATGACAACATTTTGGATCAACAGCCACAGCTCCAAACCGTTCACACCTTTACTCATTCTGAGAATCACCCAAATCCTATCCCACAGATTCCTTCATCTCCTCCTTCAACCACTGGTTGTGCTGAAAAGAATAAGAATCTGGTTGGAAACAAAAGGAAGAGAAACAATGTGAGGCTTAAAGAGAAAGGAAATGAAGTTATCCATGTAAGGGCAAAGAGAGGCCAAGCAACTGATAGCCACAGTTTAGCAGAAAGGGTGAGAAGAGAAAAAATCAATGAGAAGATGAGATATTTGCAGGAGTTGGTTCCAGGATGCTATAAGTCGATGGGAATGGCTGTAATGTTAGATGTGATAATAGATTATGTCCAATCTCTACAGCAGCAAATTGAGTTTCTATCCATGAAGCTTTCGGCAGCAAGTGTGTATTTCAGCAGTACTGAGATGGATGCCGGCAGTGAAATCATTCAGAGGAGTGCTAGCACACATGAAATACAAGAGATGGAAGGGATAGCAGGAGAAGGTTATGGTGGGATCTGCTATTTCAACCCAACATGGCCACTTTATTGA 627 0.4195 MSKVENYTLTNQGLIMPLSNNDNILDQQPQLQTVHTFTHSENHPNPIPQIPSSPPSTTGCAEKNKNLVGNKRKRNNVRLKEKGNEVIHVRAKRGQATDSHSLAERVRREKINEKMRYLQELVPGCYKSMGMAVMLDVIIDYVQSLQQQIEFLSMKLSAASVYFSSTEMDAGSEIIQRSASTHEIQEMEGIAGEGYGGICYFNPTWPLY 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00564 208 Gene3D - 91 163 IPR036638 GO:0046983
Pumo8g00564 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 145 IPR011598 GO:0046983
Pumo8g00564 208 Pfam Helix-loop-helix DNA-binding domain 99 146 IPR011598 GO:0046983
Pumo8g00564 208 MobiDBLite consensus disorder prediction 44 72 - -
Pumo8g00564 208 SMART finulus 101 151 IPR011598 GO:0046983
Pumo8g00564 208 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 60 166 IPR024097 GO:0006355
Pumo8g00564 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 159 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00564 Pumo-Chr8 19700142 19701683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00564 81 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 65.517 7.74e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo8g00564 HLH 2.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00564 - - aprc:113869931 317.005