Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00561 ATGCTAATTTGCCTATTTAATTCCACTCCCCATAAAAGGAGACCAGAAAAGAACCCATTAGATCTCAACAACTTCCCTGATGATCAGTACTCTAGAGATGGTAAACAACTCCTCCAAGATAGTTCCTCATCCGGGTGCAGGAAAAAGAAAAACGGCTTGAAGGATGCAATAGACGAGTGTGGGAAGGTCTATGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCACAGGCTCTCGGGGGACACATGAACCGCCACCGTCAAGAGAGGGAAACAGAGACGCTGAACCAAGCTCGTCAGCTGGTCTACCGTAACGATCATAACCTAAGCCCCCAACCTGCCCCCCAACTAGGATGA 357 0.4762 MLICLFNSTPHKRRPEKNPLDLNNFPDDQYSRDGKQLLQDSSSSGCRKKKNGLKDAIDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVYRNDHNLSPQPAPQLG 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00561 118 Gene3D Classic Zinc Finger 39 114 - -
Pumo8g00561 118 MobiDBLite consensus disorder prediction 11 48 - -
Pumo8g00561 118 PANTHER ZINC FINGER PROTEIN JAGGED 38 110 IPR045320 GO:0003700
Pumo8g00561 118 FunFam Zinc finger protein STAMENLESS 1 39 112 - -
Pumo8g00561 118 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Pumo8g00561 118 MobiDBLite consensus disorder prediction 80 118 - -
Pumo8g00561 118 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Pumo8g00561 118 SUPERFAMILY beta-beta-alpha zinc fingers 62 92 IPR036236 -
Pumo8g00561 118 MobiDBLite consensus disorder prediction 95 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00561 Pumo-Chr8 19623516 19625903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00561 13 106 C2H2 Transcription Factor Family AT1G13400 61.702 1.86e-26 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo8g00561 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00561 - - gmx:102664687 181.8