Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00545 ATGGAGGATCAAATCCACGGCCACACTAAAAGAATAAACCCCAATTCCCCCACGTGCTTAAAACTCTTCGGCTTCAGCGTCCATGAAGACCTTGTGGATGACGAAGCCGAAGACGCCGCCGCTGGGTTTCCGCCGTCCTCCGGCGACCGGAAATACGAGTGCCAGTACTGTTGCAGAGAGTTTGCGAACTCGCAAGCTCTGGGAGGACACCAAAACGCGCACAAGAAAGAGCGGAAACAGCTGAAGCGCGCACAGTTACAACTACAAGCCACGCGAAACCCCGCTGTTTCGTTCGTTCGGAATCCAATCATCTCCGCCTTCGCTCCGCCGCACCACCTGCTGGCAACGCCGGCTGCCCGGCCTTCGTGGGTTTACATGCGGCCACGTGCTGCGCCTCCTCCCTTCCATGTGTCGGTTTCACACGGGTGCGTGTTCCCCTCGGCGAACAGCGCCGTCAGTAACAATAGCATTGTAAAGGATGCAGGGGTGTTGCCGTATGTTGGCGGAGTAGGGGATTCCACAATGGGCTCGCAAGTACAGGCCCGGGCCCACTACGGGAGGGTTGATGGGCCATCTTTGAGTATGCTCTCTAAAGGAGAGGTGGGCCCCAATTTTGGTGACGGGCTCGGCTTGGACTTGCACCTTAGCCTAGCCCCACCGTGA 663 0.5792 MEDQIHGHTKRINPNSPTCLKLFGFSVHEDLVDDEAEDAAAGFPPSSGDRKYECQYCCREFANSQALGGHQNAHKKERKQLKRAQLQLQATRNPAVSFVRNPIISAFAPPHHLLATPAARPSWVYMRPRAAPPPFHVSVSHGCVFPSANSAVSNNSIVKDAGVLPYVGGVGDSTMGSQVQARAHYGRVDGPSLSMLSKGEVGPNFGDGLGLDLHLSLAPP 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00545 220 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Pumo8g00545 220 PANTHER ZINC FINGER PROTEIN 5 10 219 IPR044299 GO:0010090
Pumo8g00545 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Pumo8g00545 220 FunFam Zinc finger protein 6 44 104 - -
Pumo8g00545 220 SUPERFAMILY beta-beta-alpha zinc fingers 48 79 IPR036236 -
Pumo8g00545 220 Gene3D Classic Zinc Finger 41 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00545 Pumo-Chr8 18383628 18384577 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00545 20 219 C2H2 Transcription Factor Family AT1G68360 46.888 1.28e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00545 - - pvu:PHAVU_002G082900g 253.832