Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00539 ATGACAAAAAATTCCAAAGCAATCTCCCTCTCCCAAATCTCTCTCTCCTTTGACTCGAACTTCGCATCCTCCCGGGACCACCACCGTAGCTCCTCTTCCCAAGGCCATCCACCACCACCTGCCACTGCCAATCAGCCTCTCGTGACCCCACCCACCAACAAGCCACGTGGTAGGCCCCTAGGCTCTAGGAACAAGCCAAAGTCCACCTGCCTCTCAGTGGCTCAGCCCACCGAGCCCTCTGTGAAGCTTGTCAAGATCGATGTAGCTCCAGGCAGGGACGTCATCGAGACCATCCTTAACGTTGCTCGTCAGAGACACATCAGCCTCACTGTCGTTAATGCCTCTGGCACGATCGACAGCGTAACCCTTCGCAACTCACCCTACGGTGACACCACCTTCATGCTCCATGGCCCCTTCACCTTGTTGTCCCTCACTGGCTTCTACGTATACAACAACCACTACACCCTTCACCTTGGAGCCACCCCTCACCCTCCATTATATTTCGGGATCAAGCTTTCCACCTATGATGGACAGGTCTTCAGCGGCCCTATTGGTGGCAGAGTCGTTTCTGGTGACGACGTCAGTGTCATGGTCTCCACCTTCAAGAACCCCGGAATTTACAAGCACATTCCTGAAGGTGAAGTAGGGGACAACAATGGCAACAACAATAATAACAATAATCCTAGTGATGAGTGA 696 0.5302 MTKNSKAISLSQISLSFDSNFASSRDHHRSSSSQGHPPPPATANQPLVTPPTNKPRGRPLGSRNKPKSTCLSVAQPTEPSVKLVKIDVAPGRDVIETILNVARQRHISLTVVNASGTIDSVTLRNSPYGDTTFMLHGPFTLLSLTGFYVYNNHYTLHLGATPHPPLYFGIKLSTYDGQVFSGPIGGRVVSGDDVSVMVSTFKNPGIYKHIPEGEVGDNNGNNNNNNNPSDE 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00539 231 MobiDBLite consensus disorder prediction 216 231 - -
Pumo8g00539 231 MobiDBLite consensus disorder prediction 20 74 - -
Pumo8g00539 231 CDD DUF296 88 201 IPR005175 -
Pumo8g00539 231 MobiDBLite consensus disorder prediction 209 231 - -
Pumo8g00539 231 FunFam AT-hook motif nuclear-localized protein 17 80 217 - -
Pumo8g00539 231 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 203 IPR005175 -
Pumo8g00539 231 ProSiteProfiles PPC domain profile profile. 78 223 IPR005175 -
Pumo8g00539 231 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 222 IPR014476 GO:0003680
Pumo8g00539 231 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 206 - -
Pumo8g00539 231 Gene3D - 81 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00539 Pumo-Chr8 17909090 17909785 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00539 53 227 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 31.285 2.25e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00539 - - gmx:100818645 239.965