Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g00533 ATGGAGGATCAAATCCACGGCCAAACTAAAAGAATAAACCCCAATTCCCCCACGTGCTTAAAACTCTTCGGCTTCAGCGTCCATGAAGACCTTGTGGACGAGAAAGCCGAAGACGCCGCCGCTGGGTTTCCGCCATCTTCCGGCGACCGGAAATACGAGTGCCAGTACTGTTGCCGAGAGTTTGCAAACTCGCAAGCTCTGGGAGGACACCAAAAGGCGCACAAGAAAGAGCGGCAACAGCTGAAGCGCGCGCAGTTACAACTACAAGCCACGCGAAACCCCGCTGTTTCGTTCGTTCGGAATCCAATCATCTCCGCCTTCGCTCCGCCGCCGCACCTGTTGGCAACGCCGGCTGCCCCGCCTTCGTGGGTTTACATGCCGCCACGTGCTTCGCTTCCTCCCTTCCATGTGTCGGCGAACAGCGCCGTCAGTAACAATAGCATTGTAACGGATGCAGGGGTGTTGCCGTATGTTGGCGGAGTAGGGGATTCCACGATGGGCTCGCAAGTACAGGCCCAGGCCCACTACGGGAATTTTGGTGACGGGCTCGGCTTGGACTTGCACCTTAGCCTAGCCCCACCGTGA 585 0.5761 MEDQIHGQTKRINPNSPTCLKLFGFSVHEDLVDEKAEDAAAGFPPSSGDRKYECQYCCREFANSQALGGHQKAHKKERQQLKRAQLQLQATRNPAVSFVRNPIISAFAPPPHLLATPAAPPSWVYMPPRASLPPFHVSANSAVSNNSIVTDAGVLPYVGGVGDSTMGSQVQAQAHYGNFGDGLGLDLHLSLAPP 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g00533 194 SUPERFAMILY beta-beta-alpha zinc fingers 48 79 IPR036236 -
Pumo8g00533 194 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Pumo8g00533 194 Gene3D Classic Zinc Finger 39 99 - -
Pumo8g00533 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Pumo8g00533 194 FunFam Zinc finger protein 6 44 104 - -
Pumo8g00533 194 PANTHER ZINC FINGER PROTEIN 5 12 193 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g00533 Pumo-Chr8 17377443 17378152 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g00533 20 193 C2H2 Transcription Factor Family AT1G68360 45.652 2.17e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g00533 - - tpra:123911684 195.667